View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9247_low_51 (Length: 218)

Name: NF9247_low_51
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9247_low_51
NF9247_low_51
[»] chr3 (3 HSPs)
chr3 (1-203)||(8341870-8342072)
chr3 (81-187)||(8333037-8333143)
chr3 (12-139)||(26727477-26727604)
[»] chr1 (6 HSPs)
chr1 (1-202)||(44144788-44144990)
chr1 (5-139)||(44785757-44785891)
chr1 (1-139)||(35898986-35899124)
chr1 (1-93)||(44611694-44611786)
chr1 (14-202)||(11544676-11544868)
chr1 (88-202)||(44612085-44612199)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-187)||(29813-29999)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-187)||(168793-168979)
scaffold0017 (1-202)||(173802-174003)
[»] chr2 (2 HSPs)
chr2 (4-187)||(29228546-29228729)
chr2 (4-187)||(29341845-29342028)
[»] chr5 (9 HSPs)
chr5 (102-184)||(29508115-29508197)
chr5 (99-187)||(29507536-29507624)
chr5 (99-184)||(29507611-29507696)
chr5 (99-184)||(29507683-29507768)
chr5 (99-137)||(29507874-29507912)
chr5 (99-137)||(29507946-29507984)
chr5 (99-137)||(29508090-29508128)
chr5 (99-184)||(29507755-29507840)
chr5 (99-184)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8341870 - 8342072
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  8341870 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaacggtggttatgagggaaagattcctactca 8341969  T
Q  101 acttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatct 200  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8341970 acttgggaatctctcacaattgcaacaccttaatctcagtcttaatgatcttgttggtacaatccctttccaactcggaaatctttcgttattgcaatct 8342069  T
Q  201 ctg 203  Q
    |||    
T  8342070 ctg 8342072  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 8333037 - 8333143
Alignment:
Q  81 gaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaa 180  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||    
T  8333037 gagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaa 8333136  T
Q  181 atctttc 187  Q
    |||||||    
T  8333137 atctttc 8333143  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 26727477 - 26727604
Alignment:
Q  12 ggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaacttgggaatc 111  Q
    ||||| || ||||| |||||||| || |||| ||| |||||||||||| ||||||||||||    || | | | |||||||||| |||||||||| || |    
T  26727477 ggtcatatcccaaattttattggctccttcatcaatttacgataccttaatctctcaaatgccttttttaatgagaagattccttctcaacttggaaaac 26727576  T
Q  112 tctcacaattgcaacaccttaatctcag 139  Q
    ||||||| |||||||||||| |||||||    
T  26727577 tctcacagttgcaacaccttgatctcag 26727604  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 44144788 - 44144990
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgatacctt-gatctctcaaatggtggttatgaggggaagattcctactc 99  Q
    |||||||| |||||||||| |||||||||||||| || |||||||| |||||| ||||| |||||||||  |||||||||||| |||||||||||| |||    
T  44144788 tgaatactggtggtcaaatcccaaaatttattggctccttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctc 44144887  T
Q  100 aacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatc 199  Q
    |||||||||||||||||| ||||| ||||||| || | || |  ||||| ||  |||||  ||||||||||||||||||||||||||| |||||||| ||    
T  44144888 aacttgggaatctctcacgattgcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattattgcagtc 44144987  T
Q  200 tct 202  Q
    |||    
T  44144988 tct 44144990  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 44785891 - 44785757
Alignment:
Q  5 tactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaactt 104  Q
    ||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| |  || ||||||||||||||||||    
T  44785891 tactaatgatcaaattccaaaatttattggatccttcagcaacttacgataccttgacctctcagttggtggttacggtggaaagattcctactcaactt 44785792  T
Q  105 gggaatctctcacaattgcaacaccttaatctcag 139  Q
    ||||||||||||||||||| ||||||| |||||||    
T  44785791 gggaatctctcacaattgcgacaccttgatctcag 44785757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 35898986 - 35899124
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca 100  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||| |||||| |||||||||||||| ||||||  || |||||||||||| ||||    
T  35898986 tgaatactagtggtcaaatcccaaaatttattggctccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgggaagattcctgctca 35899085  T
Q  101 acttgggaatctctcacaattgcaacaccttaatctcag 139  Q
     ||| |||||||||||   |||||| ||||| |||||||    
T  35899086 gcttaggaatctctcattgttgcaataccttgatctcag 35899124  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44611694 - 44611786
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattc 93  Q
    ||||||||||||||||||| |||||||||||||| || ||| |||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  44611694 tgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagataccttgatctctcaaatagtggttttgatgggaagattc 44611786  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 11544868 - 11544676
Alignment:
Q  14 tcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattc----ctactcaacttgggaa 109  Q
    |||||| |||||||||||||| || || | ||| ||| |||||||| ||||||||||| ||  |||| | | ||||||||    || |||||||||| ||    
T  11544868 tcaaatcccaaaatttattggctccttaaccaagttatgataccttaatctctcaaatagttattatcatgcgaagattcattccttctcaacttggcaa 11544769  T
Q  110 tctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatctct 202  Q
    ||||||||| |||  ||||||| |||| || |  ||||| ||  |||||  ||| ||||||||||||||||||||||| || ||||| |||||    
T  11544768 tctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattcctttccaactcggaaatctttcattgttgcagtctct 11544676  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 44612085 - 44612199
Alignment:
Q  88 agattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||| ||    ||||| ||   ||||  ||||||||||||||| |||||||||||    
T  44612085 agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc 44612184  T
Q  188 gttattgcaatctct 202  Q
     || ||||| |||||    
T  44612185 attgttgcagtctct 44612199  T

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Target: scaffold0061 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 29999 - 29813
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca 100  Q
    ||||||| ||||||||||| |||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| |||    
T  29999 tgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattca 29900  T
Q  101 acttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    |||||||||||| |||||||||| ||| ||| |||| ||    ||||||||   ||||  |||||||||||||||||||||||||||    
T  29899 acttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttc 29813  T

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Target: scaffold0017 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 168793 - 168979
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca 100  Q
    ||||||| ||||||||||| |||||||||||||||||  ||||||| |||| ||||||||||||||||  |||||||||||| ||||||||||||| |||    
T  168793 tgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaataccttgatctctcatttggtggttatgatgggaagattcctattca 168892  T
Q  101 acttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    |||||||||||| |||||||||| ||| ||| |||| ||    ||||||||   ||||  |||||||||||||||||||||||||||    
T  168893 acttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatctttc 168979  T

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Target: scaffold0017; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 173802 - 174003
Alignment:
Q  1 tgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactca 100  Q
    ||||||||||| |||||||  ||||||||||||| || |||||||| || ||  |||||||||| |||||||||  |||||| |||||| |||||  | |    
T  173802 tgaatactagtagtcaaatctcaaaatttattggctccttcagcaagttgcggcaccttgatctgtcaaatggtcattatgatgggaaggttccttttga 173901  T
Q  101 acttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttcgttattgcaatct 200  Q
    |||||| ||||| |||||||||  | ||||| |||| || |  ||||| ||  |||||  ||||||||||||||||||||||||||| || ||||| |||    
T  173902 acttggaaatctatcacaattgtgataccttgatcttagctacaatgaactcattggagaaatccctttccaactcggaaatctttcattgttgcagtct 174001  T
Q  201 ct 202  Q
    ||    
T  174002 ct 174003  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 29228729 - 29228546
Alignment:
Q  4 atactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaact 103  Q
    |||||||||||||||| |||||||||||||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||    
T  29228729 atactagtggtcaaatcccaaaatttattggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaact 29228630  T
Q  104 tgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    ||| |||||||||||||||||||||||| |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29228629 tggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29228546  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 29342028 - 29341845
Alignment:
Q  4 atactagtggtcaaattccaaaatttattggatcgttcagcaacttacgataccttgatctctcaaatggtggttatgaggggaagattcctactcaact 103  Q
    |||||||||||||||| |||||||||||||| || |||||||| |||| ||||||  |||||||||  |||  |||||| |||||||||||| |||||||    
T  29342028 atactagtggtcaaatcccaaaatttattggctccttcagcaagttacaatacctcaatctctcaacaggtcattatgatgggaagattccttctcaact 29341929  T
Q  104 tgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    ||| |||||||||||||||||||||||| |||| ||    ||||| ||  ||||| ||||||||||||||||||||||||||||    
T  29341928 tggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatctttc 29341845  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
Q  102 cttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 184  Q
    ||||| |||||||||||||||||||||||| ||||||||  |||||| ||  ||||| |||| || |||||||| ||||||||    
T  29508197 cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct 29508115  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 29507624 - 29507536
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatctttc 187  Q
    |||||||| |||||||||||||| ||||||||| ||||||| |  ||||| ||  ||||| |||||||||| ||||||  |||||||||    
T  29507624 caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttc 29507536  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 184  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507696 caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct 29507611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 184  Q
    |||||||| |||||||||||||||||||||||| |||||||    ||||| ||  ||||| |||| || |||||||| ||||||||    
T  29507768 caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct 29507683  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 29507912 - 29507874
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctc 137  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507912 caacttggaaatctctcacaattgcaacaccttgatctc 29507874  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 29507984 - 29507946
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctc 137  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507984 caacttggaaatctctcacaattgcaacaccttgatctc 29507946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 29508128 - 29508090
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctc 137  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508128 caacttggaaatctctcacaattgcaacaccttgatctc 29508090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 184  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |  ||||| ||  |||||  ||| || |||||||| ||||||||    
T  29507840 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507755  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
Q  99 caacttgggaatctctcacaattgcaacaccttaatctcagatttaatgatcttgttggaacaatccctttccaactcggaaatct 184  Q
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T  29508056 caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct 29507971  T

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