View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9247_low_9 (Length: 547)
Name: NF9247_low_9
Description: NF9247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9247_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 803625 - 803349
Alignment:
| Q |
24 |
tatccaatgcagtaggttcataaaaaataacatggaagatgctcatatatatactgtaatactaacttgtaatagcaaataacagtaacgaaccaaattc |
123 |
Q |
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| T |
803625 |
tatccaatgtagtaggttcataaaaaataacatggaagatgctcatata----ctgtaatactaacttgtaatagcaaataacagtaacgaaccaaattc |
803530 |
T |
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| Q |
124 |
aacaagttttgggtgagcagacaccttaatccgaggacacttatttgaatagacacaatatataaactgaaattaattttagatatcccactctccaatt |
223 |
Q |
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| T |
803529 |
aacaagttttgggtgagcagacaccttaatccgaggacacttatttgaatggacaca----ataaactgaaattaattttagatatcccactctccaatt |
803434 |
T |
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| Q |
224 |
gagaattaatctcagttcctaatgacgtagtagatctctcatatgnnnnnnnaacttgactttgtcaaatggtaaagactttgctatgc |
312 |
Q |
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| T |
803433 |
gag----aatctcagttcctaatgacgtagtagatctctcatatgtttttttaacttgactttgtcaaatggtaaagactatgctatgc |
803349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 313 - 532
Target Start/End: Complemental strand, 803304 - 803094
Alignment:
| Q |
313 |
cggcataccattcatcctttgctacctggactggacgaatcaaagtagtggacaaatttgactgcttcttttgtacacttttctatgccgtgcattacaa |
412 |
Q |
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| T |
803304 |
cggcataccattcatcctttgctacctggac-----gaatcaaagtagtggacaaatttgactgcttcttttgtaaacttttctatgccgtgcattacaa |
803210 |
T |
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| Q |
413 |
tttgcaacaaattcaagctagactagtcattttggacaattattaattatcttcttttctatcaccaccatcaattccaatgtctttagctatgtttcta |
512 |
Q |
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| T |
803209 |
tttgcaacaaattcaagctagactagtcattttggaccatt----attatcttcttttctatcaccaccatcaattcctatgtctttagctatgtttcta |
803114 |
T |
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| Q |
513 |
ccattcattattcttgtact |
532 |
Q |
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| T |
803113 |
ccatgcattattcttgtact |
803094 |
T |
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