View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9248_low_13 (Length: 295)

Name: NF9248_low_13
Description: NF9248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9248_low_13
NF9248_low_13
[»] chr3 (18 HSPs)
chr3 (20-280)||(50834151-50834410)
chr3 (20-280)||(50841443-50841702)
chr3 (121-278)||(35612908-35613066)
chr3 (124-280)||(48905527-48905683)
chr3 (124-280)||(22515783-22515941)
chr3 (139-280)||(9663814-9663955)
chr3 (123-280)||(23026176-23026335)
chr3 (114-280)||(26848043-26848209)
chr3 (122-280)||(46320578-46320736)
chr3 (122-280)||(54748134-54748292)
chr3 (123-225)||(20922665-20922767)
chr3 (124-212)||(25095895-25095983)
chr3 (124-200)||(30363802-30363878)
chr3 (121-280)||(49794858-49795006)
chr3 (127-177)||(25313575-25313625)
chr3 (124-168)||(9663769-9663813)
chr3 (237-280)||(25095993-25096036)
chr3 (237-280)||(25313508-25313551)
[»] chr7 (10 HSPs)
chr7 (124-280)||(23319869-23320025)
chr7 (124-280)||(7568072-7568228)
chr7 (122-280)||(18674647-18674805)
chr7 (123-276)||(41850906-41851060)
chr7 (123-280)||(48394054-48394212)
chr7 (124-225)||(48390213-48390313)
chr7 (123-280)||(45062599-45062756)
chr7 (124-280)||(24989857-24990013)
chr7 (123-225)||(8417896-8417998)
chr7 (247-280)||(8417802-8417835)
[»] chr2 (16 HSPs)
chr2 (118-280)||(25187082-25187244)
chr2 (123-280)||(39778542-39778701)
chr2 (122-280)||(19926678-19926836)
chr2 (124-280)||(7105697-7105853)
chr2 (136-280)||(10728198-10728342)
chr2 (127-278)||(10700120-10700271)
chr2 (122-280)||(28831102-28831259)
chr2 (122-278)||(42993696-42993853)
chr2 (124-280)||(21344974-21345130)
chr2 (123-278)||(13693422-13693577)
chr2 (123-278)||(41435501-41435656)
chr2 (122-225)||(41462832-41462935)
chr2 (131-225)||(36191475-36191568)
chr2 (122-212)||(22066289-22066379)
chr2 (120-280)||(11964294-11964440)
chr2 (175-280)||(10448862-10448967)
[»] chr6 (3 HSPs)
chr6 (123-280)||(1365789-1365946)
chr6 (136-280)||(7243321-7243465)
chr6 (124-280)||(24337909-24338061)
[»] chr1 (24 HSPs)
chr1 (122-280)||(40987959-40988118)
chr1 (123-280)||(27654748-27654905)
chr1 (123-280)||(16130404-16130563)
chr1 (124-280)||(34546791-34546949)
chr1 (122-280)||(27846479-27846638)
chr1 (122-212)||(5800329-5800419)
chr1 (123-280)||(45192466-45192622)
chr1 (123-280)||(16129850-16130013)
chr1 (122-280)||(4813644-4813801)
chr1 (124-280)||(30222836-30222992)
chr1 (136-280)||(35050210-35050354)
chr1 (124-197)||(9412283-9412356)
chr1 (124-212)||(35121359-35121446)
chr1 (149-277)||(23933236-23933364)
chr1 (129-278)||(11908022-11908172)
chr1 (130-210)||(35428518-35428598)
chr1 (173-280)||(1553860-1553967)
chr1 (159-280)||(36834377-36834495)
chr1 (248-280)||(9411872-9411904)
chr1 (114-212)||(13878936-13879030)
chr1 (236-278)||(13879060-13879101)
chr1 (236-278)||(35121293-35121335)
chr1 (237-270)||(35428458-35428491)
chr1 (240-280)||(27332948-27332988)
[»] chr4 (12 HSPs)
chr4 (124-280)||(782937-783093)
chr4 (124-280)||(27627895-27628052)
chr4 (124-280)||(30537524-30537680)
chr4 (120-280)||(36187463-36187623)
chr4 (121-280)||(26877307-26877468)
chr4 (124-280)||(43034023-43034179)
chr4 (124-278)||(3067873-3068026)
chr4 (123-212)||(25934558-25934647)
chr4 (123-212)||(22651745-22651834)
chr4 (124-280)||(50150212-50150366)
chr4 (146-212)||(29989965-29990031)
chr4 (153-213)||(56551397-56551457)
[»] chr8 (11 HSPs)
chr8 (124-280)||(32305852-32306008)
chr8 (123-280)||(8669877-8670034)
chr8 (123-280)||(13882228-13882385)
chr8 (136-280)||(35634696-35634840)
chr8 (136-278)||(8107039-8107181)
chr8 (122-280)||(29226419-29226577)
chr8 (124-280)||(37533910-37534067)
chr8 (122-212)||(42570116-42570206)
chr8 (124-225)||(45177496-45177598)
chr8 (135-212)||(42450370-42450448)
chr8 (148-212)||(27420125-27420190)
[»] chr5 (8 HSPs)
chr5 (122-278)||(40385125-40385282)
chr5 (123-277)||(33314475-33314629)
chr5 (123-280)||(24868611-24868768)
chr5 (124-214)||(41174553-41174643)
chr5 (120-225)||(3097437-3097541)
chr5 (123-212)||(21262494-21262583)
chr5 (186-274)||(4238147-4238234)
chr5 (240-280)||(21262907-21262947)
[»] scaffold0008 (1 HSPs)
scaffold0008 (122-225)||(258216-258319)
[»] scaffold0067 (1 HSPs)
scaffold0067 (122-280)||(6847-7007)
[»] scaffold0057 (2 HSPs)
scaffold0057 (146-280)||(30554-30688)
scaffold0057 (146-225)||(30741-30819)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 50834410 - 50834151
Alignment:
Q  20 tgtgttgttacgttagagagagtgaggaaaagagggagtggttgtatgttgtagtggcttcgtgaataattaaaattccaataacaatcagatttcatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834410 tgtgttgttacgttagagagagtgaggaaaagagggagtggttgtatgttgtagtggcttcgtgaataattaaaattccaataacaatcagatttcatat 50834311  T
Q  120 gaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctct 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50834310 gaaatactccct-cgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctct 50834212  T
Q  220 acatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||        |||||||||||| ||||||||||||||||||||||||||||||||||    
T  50834211 acatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttact 50834151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 50841443 - 50841702
Alignment:
Q  20 tgtgttgttacgttagagagagtgaggaaaagagggagtggttgtatgttgtagtggcttcgtgaataattaaaattccaataacaatcagatttcatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841443 tgtgttgttacgttagagagagtgaggaaaagagggagtggttgtatgttgtagtggcttcgtgaataattaaaattccaataacaatcagatttcatat 50841542  T
Q  120 gaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctct 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50841543 gaaatactccct-cgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatatattgaaaatagttatcttcatttaatatatctct 50841641  T
Q  220 acatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||        |||||||||||| ||||||||||||||||||||||||||||||||||    
T  50841642 acatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttact 50841702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 35612908 - 35613066
Alignment:
Q  121 aaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctcta 220  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||    
T  35612908 aaatactccctccagtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctcta 35613007  T
Q  221 cattt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
    |||||         ||||||||||||  |||||||||||||||||||||||||||||||    
T  35613008 catttaaaaaaaattccatgaatacccctaaattaattactctttattccaccaactta 35613066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 48905527 - 48905683
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||| || |||||||    
T  48905527 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 48905626  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        | ||||||||||  |||||||||||||||||||||||||||||||||    
T  48905627 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttact 48905683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 22515941 - 22515783
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctc--tac 221  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||  |||    
T  22515941 tactccctctgatcctttatacaagaaacaaaagacataaaacatcaggactaaggaaatacattgaaaatagttatcttcatttaatacacctcaatac 22515842  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||        ||||| ||||   ||||||||||||||||||||||||||||||||||    
T  22515841 atttaaaaaaattccataaatattcttaaattaattactctttattccaccaacttact 22515783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 9663814 - 9663955
Alignment:
Q  139 tttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccat 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| || |||||||||        | |||    
T  9663814 tttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcat 9663913  T
Q  239 gaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  9663914 gaatacccctaaattaattactctttattccaccaacttact 9663955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 23026176 - 23026335
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  23026176 atactccctccgatcctttatacaagaaacaaaagacataaaatatcaggatcaaagaaatacattgaaaatagttatcttcatttaatacatctctaca 23026275  T
Q  223 ttt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||            ||||||| ||  |||||||||||||||||||||||||||||||||    
T  23026276 tttaaaaaaaaaaatcatgaatgcccctaaattaattactctttattccaccaacttact 23026335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 26848043 - 26848209
Alignment:
Q  114 tcatatgaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatat 213  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||  |||||  ||||| |||||||||||| ||||||||||||||     
T  26848043 tcatattaactactccctccgatcttttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatac 26848142  T
Q  214 atctctacatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |  |||||| ||        || ||||| ||| |||||||||||||||||||||||| |||||||||    
T  26848143 acttctacagttaaaaaaattctatgaacacccttaaattaattactctttattccatcaacttact 26848209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 46320736 - 46320578
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||| || ||||||||||| | |||||     
T  46320736 aatactccctccggtcctttatacaagaaacaacagacataaaacatcaagaccaaagaaatacattgaaaatagtaatattcatttaatacacctctat 46320637  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||        ||||| || |||  |||||||||||||||||||| ||||||||||||    
T  46320636 atttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttact 46320578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 54748292 - 54748134
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||  |||||| |||||  |||||||||||||||||||||||||| |  |||||    
T  54748292 aatactccctccaatcctttatacaataaacaaaagacataaaacatcaacaccaagaaaatacgttgaaaatagttatcttcatttaatacacttctac 54748193  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||        |  ||||||||| |||||||||||||||||||||||| ||| |||||    
T  54748192 atttaaaaaaattatatgaatacccttaaattaattactctttattccatcaatttact 54748134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 20922665 - 20922767
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||| | |||||||    
T  20922665 atactccctccggtcctttatacaaaaaacaaaagacataaaacattaggactaaggaaatacattgaaaatatttatcttcatttaatacacctctaca 20922764  T
Q  223 ttt 225  Q
    |||    
T  20922765 ttt 20922767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 25095895 - 25095983
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||||| ||||||||||||||    
T  25095895 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaata 25095983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 30363802 - 30363878
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttat 200  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  30363802 tactctctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaagaaaatacattgaaaatagttat 30363878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 49794858 - 49795006
Alignment:
Q  121 aaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctcta 220  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||           ||||||||||||||||||||||||| | |||||    
T  49794858 aaatactccttgcgatcatttatacaagaaacaaaagacataaaacatcaagacca-----------tgaaaatagttatcttcatttaatacacctcta 49794946  T
Q  221 catttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||        | ||||||||||  | |||||||||||||||||||||||||||||||    
T  49794947 catttaattttttttcatgaataccccttaattaattactctttattccaccaacttact 49795006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 25313625 - 25313575
Alignment:
Q  127 tccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaa 177  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25313625 tccctccgatcttttatacaagaaacaaaagacataaaacatcaggaccaa 25313575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 9663769 - 9663813
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9663769 tactccctccgatcctttatacaagaaacaaaagacataaaacat 9663813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 25095993 - 25096036
Alignment:
Q  237 atgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  25095993 atgaatacccttaaattaattactctttattccatcaatttact 25096036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 25313551 - 25313508
Alignment:
Q  237 atgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||||||  ||||||||||| |||||||||||||||||||||    
T  25313551 atgaatacccctaaattaattattctttattccaccaacttact 25313508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 23319869 - 23320025
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| | ||||||||    
T  23319869 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaattacattgaaaatagttatcttcgtttaatacacctctacat 23319968  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        ||||||||||||  |||||||||||||||||||||||||||||||||    
T  23319969 ttaaaaaatttccatgaatacccctaaattaattactctttattccaccaacttact 23320025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 7568072 - 7568228
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| || |||||||    
T  7568072 tactccctccggtcctttgtacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 7568171  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        | ||||||||||  |||||||||||||||||||||||||||||||||    
T  7568172 ttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttact 7568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 18674805 - 18674647
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| || |||||    
T  18674805 aatactacctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaatatagtcatcttcatttaatacatttctac 18674706  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||        | ||||||||||  |||||||||||||||||||||||||||||||||    
T  18674705 atttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttact 18674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 41850906 - 41851060
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||    
T  41850906 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaattgttatcttcatttaatacacctctaca 41851005  T
Q  223 ttt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaact 276  Q
    |||         |  |||||||||  |||||||||||||||||||||||||||||    
T  41851006 tttaaatttttttttatgaatacccctaaattaattactctttattccaccaact 41851060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 48394054 - 48394212
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac- 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||     
T  48394054 atactccctccgatcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctact 48394153  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
     |||        | || |||||||  |||||||||||||||||||||||||||||||||    
T  48394154 tttttcttcttcttcaagaatacccctaaattaattactctttattccaccaacttact 48394212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 48390213 - 48390313
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  48390213 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 48390311  T
Q  224 tt 225  Q
    ||    
T  48390312 tt 48390313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 45062756 - 45062599
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||  | |||| ||||| |||||||||||| |||||||||||||| |  | ||||    
T  45062756 atacttcctctgatcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttttaca 45062657  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||        || ||||||||| |||||||||||||| ||||||||| |||||||||    
T  45062656 tttaaaaaaattctatgaatacccttaaattaattactttttattccatcaacttact 45062599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 24990013 - 24989857
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||||| |||| || |||||||||||||||||||||||||||||| |  |||||| ||||| ||| |||||||| |||||||||||||| |  |||||||    
T  24990013 tactccttccggtcttttatacaagaaacaaaagacataaaacattaataccaagaaaatacatttaaaatagtcatcttcatttaatacacttctacat 24989914  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        || ||||||||| |||||||||||||||||||||||| |||||||||    
T  24989913 ttaaaaaaattctatgaatacccttaaattaattactctttattccatcaacttact 24989857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 8417998 - 8417896
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||  |||||| ||||| ||| |||||| | || ||||||||||| |  ||||||    
T  8417998 atactcctttcgatcttttatacaagaaacaaaagacataaaacatcaacaccaagaaaatacattaaaaatattcatattcatttaatacacttctaca 8417899  T
Q  223 ttt 225  Q
    |||    
T  8417898 ttt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 8417835 - 8417802
Alignment:
Q  247 ttaaattaattactctttattccaccaacttact 280  Q
    |||||||||||||||||||||||| |||||||||    
T  8417835 ttaaattaattactctttattccatcaacttact 8417802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 25187244 - 25187082
Alignment:
Q  118 atgaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatct 217  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||    
T  25187244 atgacatactccctctggtcctttatacaagaaacaaaagacataaaacattaggaccaaggaaatacattgaaaatagttatcttcatttaatacacct 25187145  T
Q  218 ctacatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||||        |||||||||| | ||||||||||||||||| ||||||||||||||||    
T  25187144 ctacatttaaaaaaattccatgaatatccttaaattaattactcttaattccaccaacttact 25187082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 39778542 - 39778701
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  39778542 atactccctccggtcctttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 39778641  T
Q  223 ttt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||          |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39778642 tttaaaaaaaaattccatgaatacccttaaattaattactctttattccaccaacttact 39778701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 280
Target Start/End: Original strand, 19926678 - 19926836
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||    
T  19926678 aatactccctccggtcctttatacaagaaacaaaagccataaaacatcaggaccaaggaaatacattgaaaatatttatcttcatttaatacacctctac 19926777  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
     |||        | || |||||||  |||||||||||||||||||||||||||||||||    
T  19926778 ttttttttcttcttcaagaatacccctaaattaattactctttattccaccaacttact 19926836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 7105853 - 7105697
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||| |||||||||||||| || |||||||    
T  7105853 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaataaatacattgaaaatagtcatcttcatttaatacatttctacat 7105754  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        | ||||||||||  |||||||||||||||||||||||||||||||||    
T  7105753 ttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttact 7105697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 10728198 - 10728342
Alignment:
Q  136 tcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntc 235  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||| | ||||||||||        |     
T  10728198 tcctttatacaagaaacaaaagacataaaacatcaagactaaggaaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaatt 10728297  T
Q  236 catgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  10728298 catgaatacccctaaattaattactctttattccaccaacttact 10728342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 127 - 278
Target Start/End: Original strand, 10700120 - 10700271
Alignment:
Q  127 tccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttn 226  Q
    |||||||| || |||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||     
T  10700120 tccctccggtcttttatataagaaacaaaaaacgtaaaacatcaggaccaaggaaatacattgaaaatagttattttcatttaatacacctctacattta 10700219  T
Q  227 nnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
           ||||||||||||  |||||||||||||||||||||||||||||||    
T  10700220 aaaaaattccatgaatacccctaaattaattactctttattccaccaactta 10700271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 28831259 - 28831102
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||    
T  28831259 aatactccctccggtcctttatacaagacacaaaagatataaaacatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctac 28831160  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
     |||        | ||||||||||  |||||||||||||||||||| |||||| |||||    
T  28831159 gttttaaaaaaat-catgaatacccctaaattaattactctttattgcaccaatttact 28831102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 42993696 - 42993853
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaa-gacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctcta 220  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |  ||||    
T  42993696 aatactccctccggtcctttatacaagaaacaaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaatacacttcta 42993795  T
Q  221 catttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
     ||||        ||||||||||||  |||||||||| ||||||||||||| ||||||    
T  42993796 tatttaaataaaatccatgaatacccctaaattaattcctctttattccactaactta 42993853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 21344974 - 21345130
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||| ||||||||||| || |  |||||||    
T  21344974 tactccctccagtcctttatacaagaaacaaaagacataaaacatcaagaccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacat 21345073  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        || || |||||| |||||||||||||||||||||||| |||||||||    
T  21345074 ttaaaacaattctataaatacccttaaattaattactctttattccatcaacttact 21345130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 13693422 - 13693577
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||| || || ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||||||||||| |  |||| |    
T  13693422 atactctcttcggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctata 13693521  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
    |||        | ||||||||||  |||||||||| ||||||||||||| ||||||    
T  13693522 tttaaaaaatattcatgaatacccctaaattaattcctctttattccactaactta 13693577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 41435501 - 41435656
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||  |||||| ||||  |||||||||||| |||||||||||||| |  ||||||    
T  41435501 atactccctccggtcctttatataagaaacaaaaaacataaaacatcaacaccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctaca 41435600  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
    |||        | |||||||||| ||||||||||||||||||||| || |||||||    
T  41435601 tttaattttttttcatgaatacccttaaattaattactctttatttcatcaactta 41435656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 41462935 - 41462832
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| || |||||||||||||| | |||||     
T  41462935 aatactccttccggtcctttatacaagaaacaacagacataaaacatcaagatcaaggaaatatattgaaaatggtaatcttcatttaatacacctctat 41462836  T
Q  222 attt 225  Q
    ||||    
T  41462835 attt 41462832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 36191475 - 36191568
Alignment:
Q  131 tccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacattt 225  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||| | ||||| ||||    
T  36191475 tccggtcctttatacaagaaacaaaagacataaaacat-aggaccaagaaaatacattgaaaatagttatctttatttaatacacctctatattt 36191568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 22066289 - 22066379
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||  | |||  ||||| |||||||||||| ||||||||||||||    
T  22066289 aatactccctcctgtcctttatacaagaaacaaaagacataaaacatcaacatcaataaaatacattgaaaatagtcatcttcatttaata 22066379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 11964440 - 11964294
Alignment:
Q  120 gaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctct 219  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||  |||||           ||||||||| |||||||||||||| |  |||    
T  11964440 gaaatactccctccggtcctttatacaagaaacaaaagac--aaaacatcaacaccaa-----------gaaaatagtcatcttcatttaatacacttct 11964354  T
Q  220 acatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||        || ||||||||| |||||||||||||||||||||||| |||||||||    
T  11964353 acattt-aaaaaattctatgaatacccttaaattaattactctttattccatcaacttact 11964294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 10448967 - 10448862
Alignment:
Q  175 caaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaa 274  Q
    |||| |||||||||||||||||| |||||||||||||| |  |||||||||        |  ||||||||| |||||||||||||| ||||||||| |||    
T  10448967 caagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaa 10448868  T
Q  275 cttact 280  Q
    ||||||    
T  10448867 cttact 10448862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 1365946 - 1365789
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  1365946 atactctctccggtcctttatacaagaaacaaaagacatgaaacatcaggaccaa-gaaatacattgaaaatagttatcttcatttaatacatctctaca 1365848  T
Q  223 ttt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||         |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1365847 tttacaaaaaattccatgaatacccttaaattaattactctttattccaccaacttact 1365789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 7243321 - 7243465
Alignment:
Q  136 tcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntc 235  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||        ||    
T  7243321 tcctttatacaagaaacaaaagacataaaatatcaggaccaaagaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatc 7243420  T
Q  236 catgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||    
T  7243421 catgaatacccctaaattaattattctttattccaccaacttact 7243465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 24337909 - 24338061
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    | ||||||||    
T  24337909 tactccttccggtcctttatacaagaaataaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcattta----acctctacat 24338004  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        |||||||||| |  |||||||||||||||||||||||||||||||||    
T  24338005 ttaaaaaaattccatgaataaccctaaattaattactctttattccaccaacttact 24338061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 280
Target Start/End: Original strand, 40987959 - 40988118
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  40987959 aatacttcctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatacacctctac 40988058  T
Q  222 attt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||         || |||||||||  |||||||||||||||||||||| ||||||||||    
T  40988059 atttaaaaaaaattcaatgaatacccctaaattaattactctttattccgccaacttact 40988118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 27654905 - 27654748
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| | ||||| |    
T  27654905 atactccctccgatcctttatataagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctata 27654806  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||        ||||| || |||  |||||||||||||||||||||||||||||||||    
T  27654805 tttaagaaaattccattaaaacccctaaattaattactctttattccaccaacttact 27654748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 16130404 - 16130563
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  16130404 atactccctccggtcctttatacaagaaacaaaagagataaaacatcaagatcaaggaaatacattgaaaatagttatcttcatttaatacacctctaca 16130503  T
Q  223 ttt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||          |||||||||||| |||||||||||||| |||||||||||||||||||    
T  16130504 tttaaaaaaaaaatccatgaatacccttaaattaattactttttattccaccaacttact 16130563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 34546949 - 34546791
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | || |||||    
T  34546949 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatacattgaaaatagttatcttcatttaatgcacctttacat 34546850  T
Q  224 tt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||          | ||||||||||  |||||||||||||||||||||||||||||||||    
T  34546849 ttaaaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttact 34546791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 27846638 - 27846479
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |  |||||    
T  27846638 aatactccctctggtcccttatacaagaaacaaaagacataaaacatcaggaccaaggaaatactttgaaaatagttatcttcatttaatacacttctac 27846539  T
Q  222 attt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||         |||||||||| | |||||||||||||| | |||||||||||||||||    
T  27846538 atttaaaaacaattccatgaatatccttaaattaattactatctattccaccaacttact 27846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 5800329 - 5800419
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||    
T  5800329 aatactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcatcttcatttaata 5800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 45192466 - 45192622
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||| |||||| | ||||||||||||||||||||||||||| |||||  | |||| ||||| |||||||||||| ||||||||||||||||  ||||||    
T  45192466 atacttcctccggttctttatacaagaaacaaaagacataaa-catcaacatcaagaaaatacattgaaaatagtcatcttcatttaatatacttctaca 45192564  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||        |||||||||||| |||||||||||||||||||||||| |||||||||    
T  45192565 tttaaaaaaattccatgaatacccttaaattaattactctttattccatcaacttact 45192622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 16129850 - 16130013
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||| | || ||||    
T  16129850 atactccctccggtcctttatacaagaaacaaaagacataaaacatcaaaatcaaggaaatacattgaaaatagttatcttcatttaatacacctttaca 16129949  T
Q  223 ttt------nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||              ||||||||||||  ||||||||||||| |||||||||||||||||||    
T  16129950 tttaaaaaaaaaaaaaatccatgaatacccctaaattaattactttttattccaccaacttact 16130013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 280
Target Start/End: Original strand, 4813644 - 4813801
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||| ||  | ||||||||||||| ||| ||||||||||||||||||||||| | |||| |    
T  4813644 aatactccctccggtcctttatataagaaacaaaatacataaatca--aagaccaaggaaatacattaaaaatagttatcttcatttaatacacctctcc 4813741  T
Q  222 attt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||         ||||||||||||||||||||||||||| || ||||||||||||||||    
T  4813742 atttaaatagttttccatgaatacctttaaattaattacttttcattccaccaacttact 4813801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 30222992 - 30222836
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| | ||||||| || ||||||||||||||||| ||||  |||||| ||||| |||||||||||| ||||||||||||||||  |||||||    
T  30222992 tactccctccggttctttatataaaaaacaaaagacataaaatatcaacaccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacat 30222893  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        |  ||||||| | ||||||||||||||||||| |||| |||||||||    
T  30222892 ttaaaaaaagtatatgaatatccttaaattaattactctttaatccatcaacttact 30222836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 35050210 - 35050354
Alignment:
Q  136 tcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntc 235  Q
    |||||||||||||||||||||||||||||||||||  | |||| ||||| |||||||||||| |||||||||||||| |  |||||||||              
T  35050210 tcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaa 35050309  T
Q  236 catgaatacctttaaattaattactctttattccaccaacttact 280  Q
     ||| ||||| ||||||||||||||||||||| || |||||||||    
T  35050310 tatgtatacccttaaattaattactctttatttcatcaacttact 35050354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 9412356 - 9412283
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagt 197  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  9412356 tactccctccgattccttatacaagaaataaaagacataaaacatcaagaccaaggaaatacattgaaaatagt 9412283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 35121446 - 35121359
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||  ||||| |||| ||||||| ||||||||||||||    
T  35121446 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaagactaa-aaaatacattggaaatagtcatcttcatttaata 35121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 23933236 - 23933364
Alignment:
Q  149 aaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaataccttt 248  Q
    |||||||||||||||| ||||| ||||||  ||||| |||||||||| |||| ||| ||||||||| ||||||||||        | ||||||||||  |    
T  23933236 aaacaaaagacataaatcatcaagaccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccct 23933335  T
Q  249 aaattaattactctttattccaccaactt 277  Q
    ||||||||||||||| |||| ||||||||    
T  23933336 aaattaattactcttgattctaccaactt 23933364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 278
Target Start/End: Complemental strand, 11908172 - 11908022
Alignment:
Q  129 cctccgatcctttatacaagaaacaaaaga-cataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnn 227  Q
    ||||||||||| | |||||||||||||| | |||||| ||| | || |||| ||||| |||||||||   ||| |||||||||||  ||| |||||||      
T  11908172 cctccgatcctctttacaagaaacaaaaaaacataaatcattaagatcaagaaaatacattgaaaatgactattttcatttaatacttctgtacatttaa 11908073  T
Q  228 nnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
          |||||||||||||||| ||||||||||||| ||||||||||||||    
T  11908072 atttcttccatgaatacctttacattaattactcttgattccaccaactta 11908022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 35428598 - 35428518
Alignment:
Q  130 ctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaa 210  Q
    ||||| || |||||| |||||||||||||||||||||||||  | |||| ||||| |||||||||||| ||||||||||||    
T  35428598 ctccggtcatttataaaagaaacaaaagacataaaacatcaacatcaagaaaatacattgaaaatagtcatcttcatttaa 35428518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 1553967 - 1553860
Alignment:
Q  173 accaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaatacctttaaattaattactctttattccacc 272  Q
    |||||| ||||| |||||||||||| | |||||||||||| |  |||||||||        || || |||||| |||||||||||||||||||||||| |    
T  1553967 accaagaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaattctataaatacccttaaattaattactctttattccatc 1553868  T
Q  273 aacttact 280  Q
    ||||||||    
T  1553867 aacttact 1553860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 36834495 - 36834377
Alignment:
Q  159 cataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaatacctttaaattaatta 258  Q
    ||||||| |||| |||||| |||||| ||| |||||||| ||||| |||||||| |  |||||||||        || ||||||||||  ||||||||||    
T  36834495 cataaaatatcaagaccaaagaaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaatttc-atgaatacct--aaattaatta 36834399  T
Q  259 ctctttattccaccaacttact 280  Q
    ||||||||||||||||||||||    
T  36834398 ctctttattccaccaacttact 36834377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 9411904 - 9411872
Alignment:
Q  248 taaattaattactctttattccaccaacttact 280  Q
    |||||||||||||||||||||||||||||||||    
T  9411904 taaattaattactctttattccaccaacttact 9411872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 13878936 - 13879030
Alignment:
Q  114 tcatatgaaatactccctccgatcctttatacaagaaacaaaagacataaaacatc-aggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    |||||| ||||||||||||   || |||||||||||||||||| |||||||||||| |  |||||||||||| ||    |||||| ||||||||||||||    
T  13878936 tcatattaaatactccctcgagtcttttatacaagaaacaaaa-acataaaacatcgaaaaccaaggaaatacat----aatagtcatcttcatttaata 13879030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 13879060 - 13879101
Alignment:
Q  236 catgaatacctttaaattaattactctttattccaccaactta 278  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  13879060 catgaatacctt-aaattaattactctttcttccaccaactta 13879101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 35121335 - 35121293
Alignment:
Q  236 catgaatacctttaaattaattactctttattccaccaactta 278  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||    
T  35121335 catgaatacccttaaattaattcctctttattccactaactta 35121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 35428491 - 35428458
Alignment:
Q  237 atgaatacctttaaattaattactctttattcca 270  Q
    ||||||||| ||||||||||||||||||||||||    
T  35428491 atgaatacccttaaattaattactctttattcca 35428458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 27332948 - 27332988
Alignment:
Q  240 aatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  27332948 aatacccttaaattaattactctttattccattaacttact 27332988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 783093 - 782937
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  783093 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagttatctt-atttaatacatctctacat 782995  T
Q  224 tt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||         ||||||||||||  ||||||||||| |||||||||||||||||||||    
T  782994 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttact 782937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 27628052 - 27627895
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  27628052 tactcccttcggttctttatacaagaaacaaaagacataaaacatcaggatcaaggaaatacattgaaaatagttatcttcatttaatatatttctacat 27627953  T
Q  224 tt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||         | ||||||||||  |||||||||||||||||||||||||||||||||    
T  27627952 ttaaaaaaaattacatgaatacccctaaattaattactctttattccaccaacttact 27627895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 30537524 - 30537680
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||||||||||| || |||||||    
T  30537524 tactacctccggtcctttatacaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacatttctacat 30537623  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        | ||||||||||  |||||||||||||||||||||||||||||||||    
T  30537624 ttaaaaatttttcatgaatacccctaaattaattactctttattccaccaacttact 30537680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 36187623 - 36187463
Alignment:
Q  120 gaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctct 219  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||| ||||||    
T  36187623 gaaatactccctccggtcttttatacaagaaacaaaagacataaaacatcaagaccaagaaaatacattgaaaatagttatctt-atttaatacatctct 36187525  T
Q  220 acattt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||||         ||||||||||||  ||||||||||| |||||||||||||||||||||    
T  36187524 acatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttact 36187463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 121 - 280
Target Start/End: Complemental strand, 26877468 - 26877307
Alignment:
Q  121 aaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctcta 220  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| | |||||    
T  26877468 aaatactccctccggtcctttatacaagaaacaaaagatataaaacatcaagaccaaggaaatacattgaaaatagttatcttcagttaatacacctcta 26877369  T
Q  221 cattt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||            ||||||||||  |||||||||||||||||||||||||||||||||    
T  26877368 catttaaaaaaaaaaatcatgaatacccctaaattaattactctttattccaccaacttact 26877307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 43034023 - 43034179
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||  |||||| || || |||||||||||| |||||||||||||| |  |||||||    
T  43034023 tactccctccggtcctttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctacat 43034122  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        || ||||||||| |||||||||||||||||||||||| |||||||||    
T  43034123 ttaaaataattctatgaatacccttaaattaattactctttattccatcaacttact 43034179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 3068026 - 3067873
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||| |||||||||||||| |  |||||||    
T  3068026 tactccctccggtcctttatacaataaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatacacttctacat 3067927  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
    ||        | ||||||||||| ||||||||||  ||||||||| || ||||||    
T  3067926 ttagaaaaatt-catgaatacctctaaattaattcttctttattctactaactta 3067873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 25934647 - 25934558
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||| ||||||||||||||    
T  25934647 atacttcctctgatcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagtcatcttcatttaata 25934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 22651745 - 22651834
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||| | |||||| |||||||    
T  22651745 atactccctccagtcctttatacaagaaacaaaagacataaaacatcgagaccaaagaaatacattgaaaataatcatcttcttttaata 22651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 50150212 - 50150366
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||| |||||| |||||||||||||||||||||||| ||||| || |  || ||| ||||| |||||||||| | |||||||||||||||   |||||||    
T  50150212 tacttcctccgctcctttatacaagaaacaaaagac-taaaatattaaaactaagaaaatacattgaaaataatcatcttcatttaatatgcttctacat 50150310  T
Q  224 ttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||        || | ||||||| |||||||||||||| ||||||||| |||||||||    
T  50150311 tt-aaaaaactctaggaatacccttaaattaattactttttattccatcaacttact 50150366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 29990031 - 29989965
Alignment:
Q  146 aagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    ||||||||||| ||||||| ||||| |||||| |||| ||||||||||||| ||| |||||||||||    
T  29990031 aagaaacaaaatacataaaccatcaagaccaatgaaaaatattgaaaatagctattttcatttaata 29989965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 56551397 - 56551457
Alignment:
Q  153 aaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatat 213  Q
    |||| ||||||| ||||  ||||||||||| | ||| ||||||||||| ||||||||||||    
T  56551397 aaaatacataaatcatctagaccaaggaaacacattaaaaatagttattttcatttaatat 56551457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 32306008 - 32305852
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||| |||||||| ||||||||||    
T  32306008 tactccctccggtcctttatacaagaaacaaaagacataaaacatcaagactaaagaaatacattgaaaatagttatctt-atttaatacatctctacat 32305910  T
Q  224 tt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||         ||||||||||||  ||||||||||| |||||||||||||||||||||    
T  32305909 ttaaaaaatattccatgaatacccctaaattaattattctttattccaccaacttact 32305852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 8670034 - 8669877
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||  |||||  ||||| |||||||||||| |||||||||||||| |  ||||||    
T  8670034 atactacctccgatcctttataaaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctaca 8669935  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||        |  ||||||||| |||||||||||||||||||||||| |||||||||    
T  8669934 tttaaaaaaaatttatgaatacccttaaattaattactctttattccatcaacttact 8669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 13882385 - 13882228
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||| || |||||||||||||||||| |||||||||||||  |||||| || || |||||||||||| |||||||||||||| |  ||||||    
T  13882385 atactccctccggtcttttatacaagaaacaaaaaacataaaacatcaacaccaagaaattacattgaaaatagtcatcttcatttaatacacttctaca 13882286  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||        || ||||||||| |||||||||||||||||||||||| |||||||||    
T  13882285 tttaaaataattctatgaatacccttaaattaattactctttattccatcaacttact 13882228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 35634696 - 35634840
Alignment:
Q  136 tcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntc 235  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |  | |||||||        ||    
T  35634696 tcctttatacaagaaacaaaagacataaaacatcagtaccaaagaaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatc 35634795  T
Q  236 catgaatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||||| |  |||||||||||||||||||  ||||||||||||    
T  35634796 catgaataaccctaaattaattactctttatcgcaccaacttact 35634840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 8107181 - 8107039
Alignment:
Q  136 tcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntc 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||| |  |||||||||        |     
T  8107181 tcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaatt 8107082  T
Q  236 catgaatacctttaaattaattactctttattccaccaactta 278  Q
    ||||||||||  |||||||||| ||||||||||||| ||||||    
T  8107081 catgaatacccctaaattaattcctctttattccactaactta 8107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 29226577 - 29226419
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||||  |||||  ||||| |||||||||||| |||||||||||||| |  |||||    
T  29226577 aatattccctacggtcctttatacaagaaacaaaagacataaaacatcaacaccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctac 29226478  T
Q  222 atttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||        || || |||||| |||||||||||||||||||||||| |||||||||    
T  29226477 atttaaaaaaattctatcaatacccttaaattaattactctttattccatcaacttact 29226419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 37534067 - 37533910
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacat 223  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||  | |||| ||||| ||| |||||||| |||||||||||||| || |||||||    
T  37534067 tactcccttctatcctttatacaagaaacaaaagacataaaacatcaacatcaagaaaatacattaaaaatagtcatcttcatttaatacatttctacat 37533968  T
Q  224 tt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||         |  |||||||| ||||||||||||||||||||||||| |||||||||    
T  37533967 ttaaaaaaaattatatgaatacatttaaattaattactctttattccatcaacttact 37533910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 42570206 - 42570116
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||    
T  42570206 aatactccatccgatcctttatataagaaataaaagacataaaacattaggatcaaagaaatacattgaaaatagttatcttcatttaata 42570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 45177496 - 45177598
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaat-atattgaaaatagttatcttcatttaatatatctctaca 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||| | |||||||||||| |||||||||||||| |  ||||||    
T  45177496 tactccctccgatcctttatacaaaaaacaaaagacataaaacatcaacaccaagaaaataacattgaaaatagtcatcttcatttaatacacttctaca 45177595  T
Q  223 ttt 225  Q
    |||    
T  45177596 ttt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 42450448 - 42450370
Alignment:
Q  135 atcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagtta-tcttcatttaata 212  Q
    ||||||| || ||||||||||| ||||||| ||| | |||||| |||| | |||||||||||||| | |||||||||||    
T  42450448 atcctttttataagaaacaaaatacataaaccattaagaccaatgaaaaacattgaaaatagttatttttcatttaata 42450370  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 27420190 - 27420125
Alignment:
Q  148 gaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagtta-tcttcatttaata 212  Q
    ||||||||| |||||||| |||| |||||| |||| | |||||||||||||| | |||||||||||    
T  27420190 gaaacaaaatacataaaatatcaagaccaatgaaaaacattgaaaatagttatttttcatttaata 27420125  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 40385125 - 40385282
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| |||||||||||||| |  |||||    
T  40385125 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaagaccaaagatatacattgaaaatagtcatcttcatttaatacacttctac 40385224  T
Q  222 attt-nnnnnnnntccatgaatacctttaaattaattactctttattccaccaactta 278  Q
    ||||         ||||||||||||  |||||||||| ||||||||||||| ||||||    
T  40385225 atttaaaaaataatccatgaatacccctaaattaattcctctttattccactaactta 40385282  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 277
Target Start/End: Complemental strand, 33314629 - 33314475
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| || |||||||||||||| || ||||||    
T  33314629 atactacctccgatcctttatacaagaaacaaaatacataaaacatcaagaccaaggaaatacattgaaaatggtcatcttcatttaatacatttctaca 33314530  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaactt 277  Q
     ||        | ||||||||    ||||||||||||||||||||||||||||||    
T  33314529 cttaaaaaaatttcatgaatattcctaaattaattactctttattccaccaactt 33314475  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 24868768 - 24868611
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctaca 222  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| |||||||||||||| | ||||| |    
T  24868768 atactccatccgatcctttatacaagaaacaaaagacataaaacatcaagtctaagaaaatacattgaaaatagtaatcttcatttaatacacctctata 24868669  T
Q  223 tttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
     ||        ||||| || |||  |||||||||||||||||||||||||||||||||    
T  24868668 attaagaaaattccattaacacccctaaattaattactctttattccaccaacttact 24868611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 41174553 - 41174643
Alignment:
Q  124 tactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatata 214  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||    
T  41174553 tacttcctccggtcctttatgcaagaaacaaaagacataaaacatcaagatcaaggaaatacattgaaaatagtcatcttcatttaatata 41174643  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 3097437 - 3097541
Alignment:
Q  120 gaaatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctct 219  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||||| || |||||||||| |||||||||||| |||||||||||||| |  |||    
T  3097437 gaaatactccctccggtcctttatacaagaaacata-gacataaaacatcaagatcaaggaaatacattgaaaatagtaatcttcatttaatacacttct 3097535  T
Q  220 acattt 225  Q
    ||||||    
T  3097536 acattt 3097541  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 21262494 - 21262583
Alignment:
Q  123 atactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaata 212  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||  |||||| ||||| |||||||||||| ||||||||||||||    
T  21262494 atactacctccggtcctttataaaagaaacaaaagacataaaacatcaacaccaagaaaatacattgaaaatagtcatcttcatttaata 21262583  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 4238234 - 4238147
Alignment:
Q  186 attgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaatacctttaaattaattactctttattccaccaa 274  Q
    ||||||||||||||||||||||||||| ||||||||||||        ||| ||||||||  |||||||||||||||| ||||||||||    
T  4238234 attgaaaatagttatcttcatttaatacatctctacattt-aattttttccctgaatacccctaaattaattactcttgattccaccaa 4238147  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 21262907 - 21262947
Alignment:
Q  240 aatacctttaaattaattactctttattccaccaacttact 280  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  21262907 aatacccttaaattaattactctttattccatcaacttact 21262947  T

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Target: scaffold0008 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 258216 - 258319
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| | |||||     
T  258216 aatactccctccggtcctttatacaagaaacaaaagacataaaacatcaagaccaaggaaatacattgaaaatagtaatcttcatttaatacacctctat 258315  T
Q  222 attt 225  Q
    ||||    
T  258316 attt 258319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 7007 - 6847
Alignment:
Q  122 aatactccctccgatcctttatacaagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctac 221  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||| | ||  ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  7007 aatactccatccgattctttattcaagaaacaaaagacataaaacattaagattaaggaaatacattgaaaatagttatcttcatttaatacatctctac 6908  T
Q  222 attt--nnnnnnnntccatgaatacctttaaattaattactctttattccaccaacttact 280  Q
    ||||          || ||||||| | |||||||||||||||||||||| |||||||||||    
T  6907 atttaatttttttttctatgaatatccttaaattaattactctttattctaccaacttact 6847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 30688 - 30554
Alignment:
Q  146 aagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacatttnnnnnnnntccatgaatacc 245  Q
    ||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||| || |||||||| | |||| |||||        ||||| ||||||    
T  30688 aagaaacaaaagacataaatcatcaagaccgaggaaatacattgaaaatagttattttaatttaatacacctctgcatttaaattttttccataaatacc 30589  T
Q  246 tttaaattaattactctttattccaccaacttact 280  Q
      |||||||||||||||| ||||| ||||||||||    
T  30588 cctaaattaattactcttgattccgccaacttact 30554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 30741 - 30819
Alignment:
Q  146 aagaaacaaaagacataaaacatcaggaccaaggaaatatattgaaaatagttatcttcatttaatatatctctacattt 225  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||| |||||||| ||| ||||||    
T  30741 aagaaacaaaagacataaatcatcaagaccaaggaaataaattgaaaatagttattttca-ttaatatacctcaacattt 30819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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