View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9248_low_4 (Length: 497)
Name: NF9248_low_4
Description: NF9248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9248_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 303 - 486
Target Start/End: Original strand, 44840918 - 44841101
Alignment:
| Q |
303 |
ctcatttcatttcttgttttctaactattattannnnnnnctttcattttatgagcagagaaggaaaaaagcatgcaaactacacaaaccacactatctt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44840918 |
ctcatttcatttcttgttttctaactattattatttttttctttcattttataagcagagaaagaaaaaagcatgcaaactgcacaaaccacactatctt |
44841017 |
T |
|
| Q |
403 |
tgatcactggtgagaagagcagtgagagccacgcgaaacgtgaagttcgggacaaaatgcaaaatgtcatgaaatgagtctgtg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841018 |
tgatcactggtgagaagagcagtgagagccacgcgaaacgtgaagttcgggacaaaatgcaaaatgtcatgaaatgagtctgtg |
44841101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 44840633 - 44840736
Alignment:
| Q |
16 |
caccaatatacagagaaatgttaacctaatgaagcaggtatacatatacacacactcaaaaaggggcatcataatcaacacttggttacgaactcagaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44840633 |
caccaatatacagagaaatgttaacctaatgaagcaagtatacatatacac--actcaaaaaggggcattataatcaacacttggttacgaactcagaca |
44840730 |
T |
|
| Q |
116 |
gaacac |
121 |
Q |
| |
|
|||||| |
|
|
| T |
44840731 |
gaacac |
44840736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 44840785 - 44840820
Alignment:
| Q |
170 |
ctagttcactttttacactgcttcatcacaaccgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44840785 |
ctagttcactttttacactgcttcatcacaaccgtt |
44840820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University