View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9248_low_5 (Length: 419)
Name: NF9248_low_5
Description: NF9248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9248_low_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 43031271 - 43030871
Alignment:
| Q |
18 |
acatacgcatgctatgttcattgtcactagtactgaagcttcaccagaacactgagttgggaaagaagcaccctgtttatgatggtgcgaggaattttta |
117 |
Q |
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| T |
43031271 |
acatacgcatactatgttcattgtcactagt---gaagcttcaccagaacactgagttgggaaagaagcaccctgtttatgatggtgcgaggaattttta |
43031175 |
T |
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| Q |
118 |
cactcctagttcgcttccttttacacacagagttcaatatactattgattgaggatgttgagggtattggtactg----caaggtgattgattgttcaaa |
213 |
Q |
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| T |
43031174 |
cactgctagttcgcttccttttacacacacagttcaatatactattgattgaggatgttgagggtattggtactgcaagcaaggtgattgattgttcaaa |
43031075 |
T |
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| Q |
214 |
aaactaccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagagaatttgaagttgcaatcg |
313 |
Q |
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| T |
43031074 |
aaaataccatgtaaattttctttaaacttttggattttgtaacaaatatgagttgtaaatttgtgtgttttaggggaaagagaatttgaagttgcaatcg |
43030975 |
T |
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| Q |
314 |
agnnnnnnnngcatggatcagttacatgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattgacattgtattgaaagagc |
413 |
Q |
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| T |
43030974 |
agttttttttgcatggatcagttaca--agcttctcagtggaaaaaaagtggaaactccccaagaagctatcaatgccattgacattttattgaaagagc |
43030877 |
T |
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| Q |
414 |
ttgcat |
419 |
Q |
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| T |
43030876 |
ttgcat |
43030871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 51 - 419
Target Start/End: Original strand, 46527159 - 46527537
Alignment:
| Q |
51 |
tgaagcttcaccagaacactgagttgggaaagaagcaccctgtttatgatggtgcgaggaatttttacactcctagttcgcttccttttacacac--aga |
148 |
Q |
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||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||||| | |||||||||||||||||||| ||| |
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| T |
46527159 |
tgaagtttcaccagaacactgaattgggaaagaagctccctgtttatgatggtgcagagaatctttacactgccggttcgcttccttttacacacaaaga |
46527258 |
T |
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| Q |
149 |
gttcaatatactattgattgaggatgttgagggtattggtactgcaaggtgattga-ttgttcaaaaaactaccatgtaaattttctttaaacttttgga |
247 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| || ||||| ||| ||||||||||||||||||||| ||||||| |
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| T |
46527259 |
gttcaatatactattgattgaggatgatgagggttttggtactacaaggtgattgatttattcaagaaaaaaccatgtaaattttctttaaatttttgga |
46527358 |
T |
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| Q |
248 |
ttttgtaacaaatatg-agttgtaaatttgtgtgttttaggggaaagagaatttgaagttgcaatcgag--------nnnnnnnngcatggatcagttac |
338 |
Q |
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|||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| || | ||| ||||||||| |
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| T |
46527359 |
ttttgtaacaaatatgaagttgtaaatttgtgtg--ttcagggaaagaaaatttgaagttgcaatcaagtttttagctcatgttagtatgcatcagttac |
46527456 |
T |
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| Q |
339 |
atgagcttctcaatggnnnnnnngtggaaactccccaagaagctatcaatgccattgacattgtattgaaagagcttgcat |
419 |
Q |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46527457 |
atgagcttctcagtggaaaaaaagtggaaactccacaagaagctatcaatgccattgacattgtattgaaggagcttgcat |
46527537 |
T |
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