View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9248_low_9 (Length: 311)

Name: NF9248_low_9
Description: NF9248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9248_low_9
NF9248_low_9
[»] chr2 (1 HSPs)
chr2 (1-311)||(1251830-1252160)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 1251830 - 1252160
Alignment:
Q  1 accatactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaatcatatacctgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1251830 accatactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaatcatatacctgcca 1251929  T
Q  101 atatacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaaca--------------------aaaattagct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||    
T  1251930 atatacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaacaaagttccaaggattcatttgaaaattagct 1252029  T
Q  181 caattgttacatgttaactcaagaatcaggtctcaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcccagtttttagcat 280  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1252030 caattgttacatgttaactcaagaatcaggtctgaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcccagtttttagcat 1252129  T
Q  281 ttccctcattcacagaataaatctttccttt 311  Q
    |||||||||||||||||||||||||||||||    
T  1252130 ttccctcattcacagaataaatctttccttt 1252160  T

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