View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9249_high_2 (Length: 600)

Name: NF9249_high_2
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9249_high_2
NF9249_high_2
[»] chr1 (20 HSPs)
chr1 (16-591)||(40686541-40687121)
chr1 (271-364)||(17831546-17831639)
chr1 (312-364)||(3921659-3921711)
chr1 (271-323)||(22881672-22881724)
chr1 (306-364)||(14332395-14332452)
chr1 (330-364)||(18946049-18946083)
chr1 (302-364)||(50233383-50233445)
chr1 (300-369)||(24462280-24462349)
chr1 (306-371)||(28170368-28170432)
chr1 (271-371)||(38078669-38078770)
chr1 (312-364)||(40176595-40176647)
chr1 (313-375)||(7988455-7988517)
chr1 (306-371)||(24176805-24176871)
chr1 (334-363)||(11571599-11571628)
chr1 (394-435)||(32547555-32547596)
chr1 (330-375)||(43966816-43966861)
chr1 (271-355)||(10475001-10475085)
chr1 (312-356)||(24806937-24806981)
chr1 (311-363)||(40317832-40317884)
chr1 (334-362)||(40747790-40747818)
[»] chr4 (23 HSPs)
chr4 (299-445)||(37496683-37496831)
chr4 (327-375)||(13307884-13307932)
chr4 (327-375)||(44362673-44362721)
chr4 (319-379)||(49887755-49887815)
chr4 (327-361)||(28663499-28663533)
chr4 (311-364)||(43476790-43476844)
chr4 (327-371)||(13117436-13117480)
chr4 (309-364)||(22799908-22799964)
chr4 (305-364)||(43093540-43093599)
chr4 (334-364)||(5654606-5654636)
chr4 (329-371)||(10164862-10164904)
chr4 (334-364)||(10546162-10546192)
chr4 (326-371)||(13484029-13484075)
chr4 (334-364)||(18513256-18513286)
chr4 (307-373)||(20743284-20743350)
chr4 (334-364)||(34589721-34589751)
chr4 (334-410)||(903936-904013)
chr4 (327-364)||(10634997-10635034)
chr4 (334-421)||(30982834-30982923)
chr4 (410-447)||(39619043-39619080)
chr4 (287-364)||(56049844-56049920)
chr4 (334-362)||(26276026-26276054)
chr4 (327-375)||(35062452-35062499)
[»] chr6 (25 HSPs)
chr6 (270-373)||(10031520-10031623)
chr6 (306-371)||(6751890-6751954)
chr6 (327-380)||(19369824-19369877)
chr6 (295-360)||(10421710-10421774)
chr6 (315-371)||(5579649-5579705)
chr6 (307-362)||(15443682-15443737)
chr6 (327-362)||(29959182-29959217)
chr6 (271-361)||(17168845-17168935)
chr6 (307-380)||(22745945-22746017)
chr6 (307-364)||(34868172-34868229)
chr6 (270-362)||(7377929-7378021)
chr6 (271-362)||(5970125-5970216)
chr6 (327-365)||(5635902-5635940)
chr6 (294-364)||(8623179-8623249)
chr6 (334-364)||(9024191-9024221)
chr6 (334-364)||(10157998-10158028)
chr6 (306-364)||(13211296-13211354)
chr6 (269-362)||(16388250-16388343)
chr6 (313-375)||(29670886-29670948)
chr6 (327-364)||(1334668-1334705)
chr6 (307-364)||(4859128-4859185)
chr6 (271-364)||(16516892-16516985)
chr6 (327-364)||(31430287-31430324)
chr6 (327-375)||(16503682-16503730)
chr6 (413-445)||(19369889-19369921)
[»] scaffold0024 (1 HSPs)
scaffold0024 (301-375)||(18112-18186)
[»] chr2 (18 HSPs)
chr2 (305-371)||(43586013-43586079)
chr2 (384-445)||(14450710-14450772)
chr2 (330-375)||(24067263-24067308)
chr2 (306-375)||(42665594-42665663)
chr2 (307-375)||(11439782-11439850)
chr2 (327-371)||(13501086-13501130)
chr2 (329-371)||(14450803-14450845)
chr2 (334-364)||(18570986-18571016)
chr2 (313-371)||(44984658-44984716)
chr2 (334-371)||(10535767-10535804)
chr2 (327-364)||(18512157-18512194)
chr2 (327-364)||(26787813-26787850)
chr2 (326-371)||(37211893-37211938)
chr2 (334-370)||(6180874-6180910)
chr2 (289-373)||(12748653-12748737)
chr2 (315-379)||(19613613-19613677)
chr2 (327-371)||(37491863-37491907)
chr2 (334-362)||(40681996-40682024)
[»] chr7 (23 HSPs)
chr7 (272-380)||(1885519-1885633)
chr7 (305-371)||(5937429-5937495)
chr7 (326-364)||(2144554-2144592)
chr7 (307-434)||(22801684-22801813)
chr7 (339-439)||(25956464-25956554)
chr7 (270-371)||(44317294-44317395)
chr7 (327-380)||(48964061-48964114)
chr7 (275-362)||(42720907-42720994)
chr7 (330-364)||(2143868-2143902)
chr7 (311-364)||(9050148-9050201)
chr7 (321-365)||(6091328-6091372)
chr7 (320-356)||(31377000-31377036)
chr7 (334-364)||(38134421-38134451)
chr7 (334-364)||(44172905-44172935)
chr7 (334-379)||(10893347-10893392)
chr7 (301-366)||(29910689-29910754)
chr7 (306-363)||(30516373-30516430)
chr7 (307-380)||(31808508-31808580)
chr7 (327-364)||(35238199-35238236)
chr7 (326-375)||(36196786-36196835)
chr7 (334-375)||(36314631-36314672)
chr7 (327-371)||(10702552-10702595)
chr7 (332-364)||(18678160-18678192)
[»] chr8 (24 HSPs)
chr8 (301-371)||(24295145-24295215)
chr8 (305-371)||(26915248-26915314)
chr8 (294-371)||(31119066-31119138)
chr8 (327-375)||(27733854-27733902)
chr8 (307-371)||(42874509-42874573)
chr8 (272-362)||(4786355-4786445)
chr8 (327-384)||(24208701-24208757)
chr8 (327-363)||(6960692-6960728)
chr8 (306-370)||(22600515-22600579)
chr8 (327-371)||(34073986-34074030)
chr8 (327-362)||(1639497-1639532)
chr8 (305-380)||(10497815-10497890)
chr8 (334-364)||(29198494-29198524)
chr8 (306-360)||(34739080-34739134)
chr8 (332-361)||(1591311-1591340)
chr8 (334-375)||(3508066-3508107)
chr8 (312-373)||(9936806-9936867)
chr8 (313-362)||(11246096-11246145)
chr8 (308-361)||(14227210-14227263)
chr8 (334-362)||(10441217-10441245)
chr8 (306-362)||(14943114-14943170)
chr8 (334-362)||(34201063-34201091)
chr8 (412-444)||(35014847-35014879)
chr8 (413-445)||(41686761-41686793)
[»] chr5 (20 HSPs)
chr5 (306-364)||(26205775-26205833)
chr5 (327-369)||(30080511-30080553)
chr5 (329-375)||(16207595-16207641)
chr5 (306-380)||(32444752-32444826)
chr5 (327-364)||(42192283-42192320)
chr5 (312-352)||(309150-309190)
chr5 (327-371)||(21319953-21319997)
chr5 (312-380)||(28296320-28296388)
chr5 (313-364)||(11596470-11596521)
chr5 (305-371)||(19167584-19167651)
chr5 (327-382)||(38784813-38784868)
chr5 (299-364)||(14840126-14840189)
chr5 (334-364)||(43208289-43208319)
chr5 (307-364)||(2039864-2039921)
chr5 (412-445)||(9031881-9031914)
chr5 (327-364)||(10010561-10010598)
chr5 (334-371)||(31264452-31264489)
chr5 (334-371)||(41558662-41558699)
chr5 (336-364)||(10009842-10009870)
chr5 (307-375)||(38749567-38749635)
[»] scaffold0314 (1 HSPs)
scaffold0314 (321-371)||(8949-8999)
[»] chr3 (12 HSPs)
chr3 (314-380)||(49179714-49179780)
chr3 (271-350)||(3180793-3180872)
chr3 (327-364)||(14338498-14338535)
chr3 (327-380)||(15864252-15864305)
chr3 (301-362)||(41319327-41319388)
chr3 (271-323)||(39756187-39756239)
chr3 (306-362)||(48202286-48202342)
chr3 (410-445)||(34834871-34834906)
chr3 (327-364)||(52558143-52558180)
chr3 (334-366)||(21149081-21149113)
chr3 (312-364)||(34409357-34409409)
chr3 (334-362)||(40017386-40017414)
[»] scaffold0011 (1 HSPs)
scaffold0011 (287-364)||(240036-240113)
[»] scaffold0504 (2 HSPs)
scaffold0504 (327-371)||(8705-8749)
scaffold0504 (400-445)||(8645-8691)
[»] scaffold0007 (1 HSPs)
scaffold0007 (306-371)||(225276-225341)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Complemental strand, 40687121 - 40686541
Alignment:
Q  16 caataagctaggtagccattactttggctcaacgatttgtgcacgagatgattaattggagtgcaagcctggaaccacggaatctgcggtgatcccttcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40687121 caataagctaggtagccattactttggctcaacgatttgtgcacgagatgattaattggagtgcaagcctggaaccacggaatctgcggtgatcccttcc 40687022  T
Q  116 cttctattatgctacctttattttgtatgtactctgtcatgtctgcatcaccacacattttacattcgttccatggacttcttgtgctaccttcccactc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40687021 cttctattatgctacctttattttgtatgtactctgtcatgtctgcatcaccacacattttacattcgttccatggacttcttgtgctaccttcccactc 40686922  T
Q  216 tctttttctcctcttaattttatgtcccaagtgtagtaaatagtaaattaaaatttatgaagcacggatatagacaccgacatcggacatgacactgaca 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  40686921 tctttttctcctcttaattttatgtcccaagtgtagtaaatagtaaattaaaatttatgaagcacaaatatagacaccgacatcggacatgacactgaca 40686822  T
Q  316 cgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttgg-----tatcgtatcgtgttagacacgacatgtgtcagacac 410  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||| ||     ||||||||||||||||||||||||||||||||||||    
T  40686821 cgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgtcggtatcatatcgtatcgtgttagacacgacatgtgtcagacac 40686722  T
Q  411 gggacacgccttcaatcagaagtgtccgtacaacataaattaaattaacaacaacaaatggtaaatcaccatattcaggctccatttccccattttgata 510  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40686721 ggaacacgccttcaatcagaagtgtccgtacaacatagattaaattaacaacaacaaatggtaaatcaccatattcaggctccatttccccattttgata 40686622  T
Q  511 ctttacattattagttaatcacatcattgataatatttattacttagatttctgaattcttatggaatttatctctgcttc 591  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40686621 ctttacattattagttaatcacatcattgaaaatatttattacttagatttctgaattcttatggaatttatctctgcttc 40686541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 17831639 - 17831546
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||| |||||| |||| |||| | |||||||||||| ||||| |  ||| | ||||||||||| |||| ||||| ||||||||    
T  17831639 tatgaagcacggatacagacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaatca 17831546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 3921659 - 3921711
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  3921659 gacacgtcaacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 22881724 - 22881672
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgaca 323  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  22881724 tatgaagcacggatatagacacggacaccggacacgacactgacacgccgaca 22881672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 14332395 - 14332452
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  14332395 gacactaacaagtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatca 14332452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 18946083 - 18946049
Alignment:
Q  330 aaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatca 18946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 50233383 - 50233445
Alignment:
Q  302 acatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||| |||| ||| ||| |||||| || ||||||| |||||||||||||||||||||||||||    
T  50233383 acataacacagacgcgttgacatcaattaaattttaagaaaatgacataattcaatgtaatca 50233445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 24462349 - 24462280
Alignment:
Q  300 ggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 369  Q
    ||||| ||||| || |||||||||   || ||||||||| ||||||||||||||||||||||||| ||||    
T  24462349 ggacacgacacagatacgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 28170368 - 28170432
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||| ||| |||| | |||||||||||| ||||||||||||||||||||||| | ||||||    
T  28170368 gacactgacgcgtggacaccaataaaattttga-aaaatgacataattcaatgtaataacaagtgt 28170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 38078770 - 38078669
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatga-cactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 369  Q
    |||||||||||||||  ||||| |||| |||||| || ||||||||||||||||    ||| | ||||| ||||| ||||||||||||||||| | ||||    
T  38078770 tatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagt 38078671  T
Q  370 gt 371  Q
    ||    
T  38078670 gt 38078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 40176595 - 40176647
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||| ||| | ||||||||||||||||||||| | ||||||||||||||    
T  40176595 gacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatca 40176647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 375
Target Start/End: Complemental strand, 7988517 - 7988455
Alignment:
Q  313 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||||||   |||| | ||| ||||| ||||||||||||||||||||| ||||||||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggt 7988455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 24176805 - 24176871
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgag-aaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||| ||||||||| ||| | ||||||||||||| |||||||||| ||| |||||||||| ||||||    
T  24176805 gacattgacacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 11571599 - 11571628
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatc 363  Q
    ||||||||||||||||||||||||||||||    
T  11571599 tttgagaaaatgacataattcaatgtaatc 11571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 32547596 - 32547555
Alignment:
Q  394 cgacatgtgtcagacacgggacacgccttcaatcagaagtgt 435  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  32547596 cgacatgtgtcagacaccggacacgcctttaatctgaagtgt 32547555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 43966816 - 43966861
Alignment:
Q  330 aaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||||||||| | ||||||||||||||| | ||||||||    
T  43966816 aaattttgagaaaatgatacaattcaatgtaatcacatgtgttggt 43966861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 10475085 - 10475001
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattca 355  Q
    ||||||||||||||||  |||| |||| |||||| |||| ||||||| ||||| |  ||| |  |||||||||| ||||||||||    
T  10475085 tatgaagcacggatatgaacacggacaccggacacgacattgacacgccgacaccgctaataacttgagaaaatcacataattca 10475001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 24806937 - 24806981
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaa 356  Q
    |||||||| ||||  |||||||||||||||||| |||||||||||    
T  24806937 gacacgtcaacatggataaaattttgagaaaataacataattcaa 24806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 40317884 - 40317832
Alignment:
Q  311 tgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatc 363  Q
    ||||| || ||||||  |||||||||||||||||| ||||||||||| |||||    
T  40317884 tgacatgtggacatcggtaaaattttgagaaaatggcataattcaatataatc 40317832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 40747818 - 40747790
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  40747818 tttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 299 - 445
Target Start/End: Original strand, 37496683 - 37496831
Alignment:
Q  299 cggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcg-tgttagacacgac 397  Q
    |||||| ||||||||||||| |||| | ||||  |||||||||||||||||||||||||||||||| |||||| ||| | || ||| ||   ||||||||    
T  37496683 cggacacgacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgac 37496782  T
Q  398 atgtgtcagaca-cgggacacgccttcaatcagaagtgtccgtacaaca 445  Q
    |  |||| |||| ||||||||||||||||||| |||||||||| |||||    
T  37496783 acatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaaca 37496831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 13307884 - 13307932
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggt 13307932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 44362673 - 44362721
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  44362673 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggt 44362721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 49887755 - 49887815
Alignment:
Q  319 cgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 379  Q
    ||||||| ||||||||||||  |||||||||||||||||||||| |||| | |||||||||    
T  49887755 cgacatcgataaaattttgaagaaatgacataattcaatgtaattaaaaatattggtatcg 49887815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 28663499 - 28663533
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaa 361  Q
    |||||||||||||||||||||||||||||||||||    
T  28663499 ataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 43476790 - 43476844
Alignment:
Q  311 tgacacgtcgacatccataa-aattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||| |||| |||||||||| |||||||||||| ||||||||||    
T  43476790 tgacacgtcgacatcaataataattttgagagaatgacataatttaatgtaatca 43476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 13117436 - 13117480
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgt 13117480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 22799964 - 22799908
Alignment:
Q  309 actgacacgtcgacatccataa-aattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||| | | || |||||| |||||||||||||||||||||||||||    
T  22799964 actgacacgtcgacaacaagaataatttttagaaaatgacataattcaatgtaatca 22799908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 43093599 - 43093540
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||| ||| |||||| | ||||| |||||| ||||||| ||||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatca 43093540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 5654636 - 5654606
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  5654636 tttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 10164904 - 10164862
Alignment:
Q  329 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Original strand, 10546162 - 10546192
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  10546162 tttgagaaaatgacataattcaatgtaatca 10546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 13484029 - 13484075
Alignment:
Q  326 cataaaattttgagaaaatgacataattc-aatgtaatcaaaagtgt 371  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  13484029 cataaaattttgagaaaataacataattcaaatgtaatcacaagtgt 13484075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 18513286 - 18513256
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  18513286 tttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 20743350 - 20743284
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 373  Q
    ||||||||||| |||||   |||| | |||||||||||||||||||||| |||||||| | ||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 34589751 - 34589721
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  34589751 tttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 903936 - 904013
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtcagacac 410  Q
    ||||||||||| |||||||||| |||||| | | || |  |||||||||| ||||| ||||||||||||||| |||||    
T  903936 tttgagaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgttggacacgacatgtgtccgacac 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 10634997 - 10635034
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  10634997 ataaaattttgaaaaaatgacataattcaatgttatca 10635034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 30982923 - 30982834
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtcagaca-cgggacacgcct 421  Q
    ||||||||||| ||||| |||| |||||| | |||||| ||| |||| || |||| |||||||||| ||||| |||| ||||||||||||    
T  30982923 tttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 39619080 - 39619043
Alignment:
Q  410 cgggacacgccttcaatcagaagtgtccgtacaacata 447  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39619080 cgggacacaccttcaatcagaagtgtccgtgcaacata 39619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 56049844 - 56049920
Alignment:
Q  287 agacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||| |||| |||||| ||||| ||||| |||||| | |||| | ||||||||| ||||||| |||||||||||||    
T  56049844 agacacggacaccggacacgacacggacacatcgacaccgataataatttgagaaa-tgacatagttcaatgtaatca 56049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 26276054 - 26276026
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  26276054 tttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 35062452 - 35062499
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||||||    
T  35062452 ataaaattttga-aaaataatataattcaatgtaatcataagtgttggt 35062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 10031520 - 10031623
Alignment:
Q  270 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 369  Q
    |||||||||||||| | |||||| || | | ||||||||||  |||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  10031520 ttatgaagcacggacacagacacggataccagacatgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 10031619  T
Q  370 gttg 373  Q
    ||||    
T  10031620 gttg 10031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 6751954 - 6751890
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||| | || || |||||||||||||||||||||||||||||||||||||| ||||||    
T  6751954 gacactgacacgac-acgtcgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 6751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 19369824 - 19369877
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgt 19369877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 10421710 - 10421774
Alignment:
Q  295 acatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgta 360  Q
    |||||||||| |||||||||||||||||| |||||  ||||| |||||||||||||||| ||||||    
T  10421710 acatcggacacgacactgacacgtcgaca-ccatagtattttaagaaaatgacataattgaatgta 10421774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 5579649 - 5579705
Alignment:
Q  315 acgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 15443682 - 15443737
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    ||||||||||||||||||| |||| | ||||||||||| |||||||||||| ||||    
T  15443682 acactgacacgtcgacatcaataataatttgagaaaataacataattcaatataat 15443737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 29959182 - 29959217
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaat 362  Q
    ||||||||||||||||||||||||||||||||||||    
T  29959182 ataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 17168845 - 17168935
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaa 361  Q
    |||||||||| |||  |||||| |||| || ||| |||||  ||||||||||||  |||| | ||||| ||||||||||||||||||||||    
T  17168845 tatgaagcacagattcagacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 22745945 - 22746017
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||||| |||||| | |||||||||||||||||||  ||| ||||||||||||| |||||| ||| ||||    
T  22745945 acactgacacatcgaca-cgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtcgt 22746017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 34868229 - 34868172
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||| ||||||||||| | |||||||||||||| |||  ||||||||||||||||||    
T  34868229 acactaacacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatca 34868172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 7377929 - 7378021
Alignment:
Q  270 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    ||||||||||||||||  ||| | |||| ||||||  |||| |||||  ||||| |  ||||| ||||||||||| |||||||||||||||||    
T  7377929 ttatgaagcacggatacggacccagacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataattcaatgtaat 7378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 5970216 - 5970125
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||| ||||  ||||| |||| |||||||||||| ||||||||||||    ||| | ||||| ||||| |||||||||| ||||||    
T  5970216 tatgaagcacagatacggacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaat 5970125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 5635940 - 5635902
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaa 365  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatcaa 5635902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 8623179 - 8623249
Alignment:
Q  294 gacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||| |||||| ||||||||||||| |||| | |||| | ||| |||||||||||| ||| ||||||||||    
T  8623179 gacaccggacacgacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatca 8623249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 9024221 - 9024191
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  9024221 tttgagaaaatgacataattcaatgtaatca 9024191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Original strand, 10157998 - 10158028
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatca 10158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 13211354 - 13211296
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||| |||||||||||||  |||| | |||||||||||||||||||| ||| ||||||    
T  13211354 gacaccgacacgtcgacattgataataatttgagaaaatgacataatttaatataatca 13211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 16388343 - 16388250
Alignment:
Q  269 tttatgaagcacggatatagacaccgacatcggaca-tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||| |||| |||||| |||||||||||  |||||||||||||||| |  || || | ||||| ||||| |||||||||| ||||||    
T  16388343 tttatgaagcaccgatagagacacggacatcggacacggacactgacacgtcgataagca-aataatttgaaaaaatcacataattcagtgtaat 16388250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 29670886 - 29670948
Alignment:
Q  313 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||| |||||| | | |||||||||||||||| ||||||||||| || | ||||||||    
T  29670886 acacgtcgatatccatcataatttgagaaaatgacatgattcaatgtaaccacatgtgttggt 29670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 1334668 - 1334705
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  1334668 ataaaattttgaaaaaaggacataattcaatgtaatca 1334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 4859185 - 4859128
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||| ||| ||||||| | |||| | ||||||||||||||||||| |||||||||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatca 4859128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 16516892 - 16516985
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||| || | ||||||||||| |  |||  |||||||||| |||  | | |||||||||||||||||  | |||||||||||||||||    
T  16516892 tatgaagcactgacacagacaccgacaacaaacacaacactgacacttcgtaaccgataaaattttgagaaaactatataattcaatgtaatca 16516985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 31430287 - 31430324
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  31430287 ataaaattttgagaaaatgacatgattaaatgtaatca 31430324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 16503682 - 16503730
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||||||||||||  | |||||||||||||||||  |||||||||    
T  16503682 ataaaattttgagaaaactatataattcaatgtaatcactagtgttggt 16503730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 19369889 - 19369921
Alignment:
Q  413 gacacgccttcaatcagaagtgtccgtacaaca 445  Q
    ||||||||||||||||||||||||||| |||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaaca 19369921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 301 - 375
Target Start/End: Complemental strand, 18186 - 18112
Alignment:
Q  301 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  18186 gacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggt 18112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 43586079 - 43586013
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||    
T  43586079 tgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 43586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 14450772 - 14450710
Alignment:
Q  384 gtgttagacacgacatgtgtcagacac-gggacacgccttcaatcagaagtgtccgtacaaca 445  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  14450772 gtgtcagacaggacatgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaaca 14450710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 24067263 - 24067308
Alignment:
Q  330 aaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgttggt 24067308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 42665594 - 42665663
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||| ||||||||||| ||| |||||||||||| || ||||||| |||||||||||||| | ||||||||    
T  42665594 gacattgacacgtcgatatcgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgttggt 42665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 11439782 - 11439850
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||||| | ||| |||||||| ||||||||| |||||||||| |||||||| |||| |||||    
T  11439782 acactgacacgtcaaaatcgataaaattatgagaaaataacataattcagtgtaatcacaagtattggt 11439850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 13501130 - 13501086
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  13501130 ataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  329 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Original strand, 18570986 - 18571016
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  18570986 tttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 44984716 - 44984658
Alignment:
Q  313 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||||| | || ||||||||| ||||||| |||||||||||| |||| ||||||    
T  44984716 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgt 44984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 10535804 - 10535767
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  10535804 tttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 18512194 - 18512157
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||| | |||||||||||||||||    
T  18512194 ataaaattttgagaaaataatataattcaatgtaatca 18512157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 26787850 - 26787813
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26787850 ataaaaatttgagaaaatgacataattcgatgtaatca 26787813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 37211938 - 37211893
Alignment:
Q  326 cataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||| |||||||||||| ||||||||||||| | ||||||    
T  37211938 cataaaatttcgagaaaatgacacaattcaatgtaattacaagtgt 37211893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 6180910 - 6180874
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtg 370  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6180910 tttgagaaaatgacatgattcaatgtaatcataagtg 6180874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 12748653 - 12748737
Alignment:
Q  289 acaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 373  Q
    |||| |||| |||||| ||||| ||||||  |||||  |||| | ||||||||||||||||| |||| |||||||| | ||||||    
T  12748653 acacagacaccggacacgacacggacacgctgacatggataataatttgagaaaatgacatagttcagtgtaatcataggtgttg 12748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 19613677 - 19613613
Alignment:
Q  315 acgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 379  Q
    |||||||||  ||||| | ||||||||||| ||||||||||||||||| | | ||||| ||||||    
T  19613677 acgtcgacactcataataatttgagaaaataacataattcaatgtaatgatatgtgttagtatcg 19613613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 37491907 - 37491863
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||||||||| || |||||||||||||| ||| ||||    
T  37491907 ataaaattttgagaaaataacttaattcaatgtaattaaatgtgt 37491863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 40681996 - 40682024
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  40681996 tttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 380
Target Start/End: Original strand, 1885519 - 1885633
Alignment:
Q  272 atgaagcacggatatagacaccgacatcggacatgacactgacacg------tcgacatccataaaattttgagaaaatgacataattcaatgtaatcaa 365  Q
    |||||||||||||| |||||| |||| |||||| |||||||| |||      ||||||   |||||||||||| |||||||||||||||||||||||||     
T  1885519 atgaagcacggatacagacacggacaccggacacgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcac 1885618  T
Q  366 aagtgttggtatcgt 380  Q
    |||||| ||| ||||    
T  1885619 aagtgtcggtgtcgt 1885633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 5937495 - 5937429
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||    
T  5937495 tgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 5937429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 2144592 - 2144554
Alignment:
Q  326 cataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2144592 cataaaattttgagaaaatgacataattcaatgtaatca 2144554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 434
Target Start/End: Complemental strand, 22801813 - 22801684
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtca 405  Q
    |||| |||||||| ||| | || ||||||||||| |||||||||||||| |||||||| |||||| ||| |  | || ||||  ||||| |||  ||||     
T  22801813 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccacacttgtcg 22801714  T
Q  406 gacac-gggacacgccttcaatcagaagtg 434  Q
    ||||| ||||||||||||||||||||||||    
T  22801713 gacactgggacacgccttcaatcagaagtg 22801684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 25956464 - 25956554
Alignment:
Q  339 gaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcgtgttagacacgacatgtgtcagacacgggacacgccttcaatcagaagtgtccg 438  Q
    |||||||||||||||||||||||||| |||||| ||| |||          ||||||| |  |||| |||||||||||||||||||||||||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcg----------gacacgatacatgtcggacacgggacacgccttcaatcagaagtgtccg 25956553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 371
Target Start/End: Complemental strand, 44317395 - 44317294
Alignment:
Q  270 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 369  Q
    |||||||||||||||| | |||  |||| | |||| ||| || |||||| ||||   |||||||||| | ||||||||||||||||||||||||| ||||    
T  44317395 ttatgaagcacggatacaaacatggacacctgacacgaccctaacacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagt 44317296  T
Q  370 gt 371  Q
    ||    
T  44317295 gt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 48964114 - 48964061
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||| ||||    
T  48964114 ataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgt 48964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 42720994 - 42720907
Alignment:
Q  275 aagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||  ||||| |||||| |||||||||||||||||| |||| |  ||| | ||||| ||||| |||||||| ||||||||    
T  42720994 aagcacggatacggacacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaat 42720907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 2143902 - 2143868
Alignment:
Q  330 aaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatca 2143868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 9050201 - 9050148
Alignment:
Q  311 tgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||  |||||||||||| ||||||||||| |||||| ||||||    
T  9050201 tgacacgtcgacatagataaaattttgaaaaaatgacatagttcaatataatca 9050148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 6091328 - 6091372
Alignment:
Q  321 acatccataaaattttgagaaaatgacataattcaatgtaatcaa 365  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||    
T  6091328 acatcaataaaattttgagaaaatgatataattcaatataatcaa 6091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 31377000 - 31377036
Alignment:
Q  320 gacatccataaaattttgagaaaatgacataattcaa 356  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31377000 gacatcaataaaattttgagaaaatgacataattcaa 31377036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 38134451 - 38134421
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  38134451 tttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 44172935 - 44172905
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  44172935 tttgagaaaatgacataattcaatgtaatca 44172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 10893392 - 10893347
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 379  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||    
T  10893392 tttgagaaaatgacataattgaatgtaatcgcatgtgttggtatcg 10893347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 29910689 - 29910754
Alignment:
Q  301 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaa 366  Q
    |||||||||||||||||| |||| |  |  || ||||||||||||||| |||| ||||||||||||    
T  29910689 gacatgacactgacacgtggacaccggtggaaatttgagaaaatgacagaattgaatgtaatcaaa 29910754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 30516430 - 30516373
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatc 363  Q
    ||||||||||||||||||   | || | ||||||||||||| ||||||||||||||||    
T  30516430 gacactgacacgtcgacactaacaataatttgagaaaatgatataattcaatgtaatc 30516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 31808580 - 31808508
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||||||||| || | |||| | ||||||||||||||| || |||||||||||| | |||||||| ||||    
T  31808580 acactgacacgtcg-caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgt 31808508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 35238236 - 35238199
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  35238236 ataatattttgagaaaatgacataattcaatataatca 35238199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 36196786 - 36196835
Alignment:
Q  326 cataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||||||||||  |||||||||||  |||||| ||||||||||    
T  36196786 cataaaattttgagaaaacaacataattcaacataatcacaagtgttggt 36196835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 36314672 - 36314631
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  36314672 tttgagaaaatgacatatttcaatgtaatcatatgtgttggt 36314631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 10702595 - 10702552
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||    
T  10702595 ataaaattttgagaaaatgacat-attcaatgtaattataagtgt 10702552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  332 attttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||| ||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 24295215 - 24295145
Alignment:
Q  301 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||| |||||||||| ||||||||| |||||||| ||||||||||||| |||| |||||||||| ||||||    
T  24295215 gacacgacactgacatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgt 24295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 26915314 - 26915248
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||| ||||||||||||   ||||||||||||||||||||||||||| |||||||||| ||||||    
T  26915314 tgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 31119066 - 31119138
Alignment:
Q  294 gacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||| |||||||||||||||||| || ||||     ||||||||||||||||||||||||||||||||||| ||||||    
T  31119066 gacaccggacatgacactgacacatctacat-----aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 27733854 - 27733902
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  27733854 ataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggt 27733902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 42874509 - 42874573
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||| ||||||    
T  42874509 acacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 4786445 - 4786355
Alignment:
Q  272 atgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||| |||||| |||| || ||| |||||||||||| ||||| |  ||| | ||| ||||||| |||||||||| ||||||    
T  4786445 atgaagcacggatacagacactgacaccgaacacgacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaat 4786355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 24208757 - 24208701
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcg 384  Q
    |||||||||| ||||||||||||| ||||||| |||||  ||||||||||||||||||    
T  24208757 ataaaattttaagaaaatgacatatttcaatg-aatcactagtgttggtatcgtatcg 24208701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 6960728 - 6960692
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatc 363  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6960728 ataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 22600515 - 22600579
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtg 370  Q
    ||||||||||| || ||| | |||||||||  |||||||||||||||||||| |||||| |||||    
T  22600515 gacactgacacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 34074030 - 34073986
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||    
T  34074030 ataaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 1639497 - 1639532
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||| |||||||||||||||||||||||||||||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 10497890 - 10497815
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||| |||||| |||||   |||||||||||||||||| ||||||||  ||||||||| ||||||  |||||||    
T  10497890 tgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgt 10497815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 29198524 - 29198494
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  29198524 tttgagaaaatgacataattcaatgtaatca 29198494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 34739134 - 34739080
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgta 360  Q
    ||||| ||||||| |||||| |||| | | |||||||||||||||||||||||||    
T  34739134 gacaccgacacgttgacatcgataataatatgagaaaatgacataattcaatgta 34739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Original strand, 1591311 - 1591340
Alignment:
Q  332 attttgagaaaatgacataattcaatgtaa 361  Q
    ||||||||||||||||||||||||||||||    
T  1591311 attttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 3508066 - 3508107
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||||||| ||||||||||||||||||| | ||||||||    
T  3508066 tttgagaaaataacataattcaatgtaatcatatgtgttggt 3508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 9936806 - 9936867
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 373  Q
    |||||||||||||| |||| | ||| ||||||||| |||||||||| |||||| | ||||||    
T  9936806 gacacgtcgacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 11246145 - 11246096
Alignment:
Q  313 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||||| | |||| |||||||||||||||||| ||||||| |||||||||    
T  11246145 acacgttggcatcgataaaattttgagaaaataacataatgcaatgtaat 11246096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 14227210 - 14227263
Alignment:
Q  308 cactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaa 361  Q
    |||||||||||| ||| | |||| | ||||||||||| ||||||||||||||||    
T  14227210 cactgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 10441217 - 10441245
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  10441217 tttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 14943170 - 14943114
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    ||||||||||| | |||| | ||||||||||||||||||||| | ||||| ||||||    
T  14943170 gacactgacacattgacaccaataaaattttgagaaaatgacttgattcagtgtaat 14943114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 34201091 - 34201063
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  34201091 tttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 35014847 - 35014879
Alignment:
Q  412 ggacacgccttcaatcagaagtgtccgtacaac 444  Q
    ||||||||||||||||||||||||| |||||||    
T  35014847 ggacacgccttcaatcagaagtgtcggtacaac 35014879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 41686793 - 41686761
Alignment:
Q  413 gacacgccttcaatcagaagtgtccgtacaaca 445  Q
    ||||||||||||||||||||||||| |||||||    
T  41686793 gacacgccttcaatcagaagtgtccatacaaca 41686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 26205833 - 26205775
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||    
T  26205833 gacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 30080553 - 30080511
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagt 369  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 16207641 - 16207595
Alignment:
Q  329 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttggt 16207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 32444752 - 32444826
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||||||||| ||| |  ||| | |||||||| |||||||||||||||||||||||| |||| ||| ||||    
T  32444752 gacactgacacgtcaacaccattaacaatttgagaagatgacataattcaatgtaatcaaatgtgtcggtgtcgt 32444826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 42192283 - 42192320
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatca 42192320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 309150 - 309190
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataat 352  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  309150 gacacgtcgacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 21319997 - 21319953
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  21319997 ataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 28296320 - 28296388
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||| ||||||| | |||| | ||||||||||||||||||||||||||| ||| | |||||||| ||||    
T  28296320 gacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 11596521 - 11596470
Alignment:
Q  313 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||| | | |||| | |||||||||||||||||||||||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 19167651 - 19167584
Alignment:
Q  305 tgacactgacacgtcgacatccataaaattttgagaaaa-tgacataattcaatgtaatcaaaagtgt 371  Q
    |||||| ||||||| |||| | |||||||||||| |||| ||||| ||||||||||||||| ||||||    
T  19167651 tgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgt 19167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 38784813 - 38784868
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtat 382  Q
    |||||||| ||| ||||||| ||||||||||||||||| ||||||  |||||||||    
T  38784813 ataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtcagtatcgtat 38784868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 14840189 - 14840126
Alignment:
Q  299 cggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    ||||||||||||||||||   |||||  |||||||||||||| |||| |||||||||| |||||||    
T  14840189 cggacatgacactgacact--gacatggataaaattttgagacaatggcataattcaaagtaatca 14840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 364
Target Start/End: Complemental strand, 43208319 - 43208289
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||||    
T  43208319 tttgagaaaatgacataattcaatgtaatca 43208289  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 2039921 - 2039864
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||| |||||||||||| |  ||| | |||||||||||||||| ||||||||||||||    
T  2039921 acacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 9031914 - 9031881
Alignment:
Q  412 ggacacgccttcaatcagaagtgtccgtacaaca 445  Q
    |||||||||||||||||||||||||||| |||||    
T  9031914 ggacacgccttcaatcagaagtgtccgtgcaaca 9031881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 10010561 - 10010598
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatca 10010598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 31264452 - 31264489
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  31264452 tttgagaaaatgacataattcagtgtaatcataagtgt 31264489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 41558699 - 41558662
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  41558699 tttgagaaaatgacataattcaatgtaattaaatgtgt 41558662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 364
Target Start/End: Original strand, 10009842 - 10009870
Alignment:
Q  336 tgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||||||||||||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatca 10009870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 38749635 - 38749567
Alignment:
Q  307 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 375  Q
    |||| |||| ||||||| | |||| | ||||| ||||||||||||||||||||||| | | ||||||||    
T  38749635 acacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggt 38749567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 8949 - 8999
Alignment:
Q  321 acatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  8949 acatcgataaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 49179780 - 49179714
Alignment:
Q  314 cacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    |||||||||| | |||||||||||||||| ||||||||||| ||||||||| |||||| ||| ||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtcgt 49179714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 3180872 - 3180793
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacata 350  Q
    ||||||||||||| | | |||| |||| |||||| |||||||||||||| |||   |||||||||| |||||||||||||    
T  3180872 tatgaagcacggacacaaacacggacaccggacaggacactgacacgtctacaatgataaaattttaagaaaatgacata 3180793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 14338535 - 14338498
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14338535 ataaaattttgaaaaaatgacataattcaatgtaatca 14338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 15864252 - 15864305
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 380  Q
    ||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||    
T  15864252 ataaagttttgagaaaatgacataattcaatataatcattagtgttggtgtcgt 15864305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 41319388 - 41319327
Alignment:
Q  301 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||| ||||| |||||||||||| | |||| | ||||| |||||||||||||||||||||||    
T  41319388 gacacgacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 39756187 - 39756239
Alignment:
Q  271 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgaca 323  Q
    |||||||||||||||| || || ||||||||||| |||||||||||| |||||    
T  39756187 tatgaagcacggatatggatacggacatcggacacgacactgacacgccgaca 39756239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 48202342 - 48202286
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 362  Q
    |||| ||||||| |||||||||||| | ||||||||||| |||||||| ||||||||    
T  48202342 gacattgacacgccgacatccataatagtttgagaaaatcacataatttaatgtaat 48202286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 445
Target Start/End: Complemental strand, 34834906 - 34834871
Alignment:
Q  410 cgggacacgccttcaatcagaagtgtccgtacaaca 445  Q
    |||||||||||||||||||||||||||||| |||||    
T  34834906 cgggacacgccttcaatcagaagtgtccgtgcaaca 34834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 52558180 - 52558143
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  52558180 ataaaaatttgagaaaaggacataattcaatgtaatca 52558143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 21149081 - 21149113
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaatcaaa 366  Q
    |||||||||||||||||||||| ||||||||||    
T  21149081 tttgagaaaatgacataattcagtgtaatcaaa 21149113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 34409409 - 34409357
Alignment:
Q  312 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||||| ||| | |||| | || ||||||||||||||||||||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatca 34409357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 40017414 - 40017386
Alignment:
Q  334 tttgagaaaatgacataattcaatgtaat 362  Q
    |||||||||||||||||||||||||||||    
T  40017414 tttgagaaaatgacataattcaatgtaat 40017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 364
Target Start/End: Complemental strand, 240113 - 240036
Alignment:
Q  287 agacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 364  Q
    |||||| |||| |||||||||||| |||| || |||| | |||| | ||||||||||| | |||||||||||||||||    
T  240113 agacacggacaccggacatgacacggacatgttgacaactataataatttgagaaaataatataattcaatgtaatca 240036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 8749 - 8705
Alignment:
Q  327 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||    
T  8749 ataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 8691 - 8645
Alignment:
Q  400 gtgtcagacac-gggacacgccttcaatcagaagtgtccgtacaaca 445  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaaca 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 225341 - 225276
Alignment:
Q  306 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 371  Q
    |||||||||||| |||||   |||| | ||||||||||||||||||| ||||||||| | ||||||    
T  225341 gacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgt 225276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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