View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_1 (Length: 974)
Name: NF9249_low_1
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 24604247 - 24604637
Alignment:
| Q |
18 |
agaagctactatttatagcattagcaaaacacacgtccatggctccccaccgtaattcaaaactgaccaaacagcttaaatgtttctactatttttgttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24604247 |
agaagctactatttatagcattagcaaaacacacgtccatggctccccaccgtgattcaaaactgaccaaacagcttaaatgtttctactatttttgttg |
24604346 |
T |
|
| Q |
118 |
gtttgaatgaaatataagnnnnnnn-attcataaactttattggattgtttttatgacattcaaaaagagggaccaattttaatatatgaaaattgaagg |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24604347 |
gtttgaatgaaatataagttttttttattcataaactttattggattgtttttatgacattcaaaaagagggaccaattttattatatgaaaattgaagg |
24604446 |
T |
|
| Q |
217 |
atcaatttagaaaatttaaacatttatagtgagcaatttgcaactttaaaaatattatagggggttaatttataaagtttgaaaatatagggatcaatgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24604447 |
atcaatttagaaaatttaaacatttatagtgagcaatttgcaactttaaaaatattatagggggttaatttataaagtttgaaaatatagggatcaatgc |
24604546 |
T |
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| Q |
317 |
ctaattttttgaaaaatataagaacaaatttgcataatttaaaagaattattaggaccacttggagattcacagtaaagaagaagtttcaa |
407 |
Q |
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| T |
24604547 |
ctaaatttttgaaaaatataagaacaaatttgcataatttaaaagaattattaggaccacttggagattcacagtaaagaagaagtttcaa |
24604637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 466 - 964
Target Start/End: Original strand, 24604698 - 24605200
Alignment:
| Q |
466 |
caaataatctagt---ggtagaacttttacctttaagacgaataatcagaaaatctaaaattcaaccaaccatgcatatttcaatgcatgttcctatcaa |
562 |
Q |
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||||||||||||| |||| || |||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| || |
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| T |
24604698 |
caaataatctagtactggtacaaattttacctttaagacgaataattagaaaatctaaaattcgaacggccatgcatatttcaatgcatgttcctaacat |
24604797 |
T |
|
| Q |
563 |
attcttggggacttctttaacaaaatacttcataaaatatcatagttttaaaaattcttccaatttatgatataaacaatagagttgaattactttctaa |
662 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
24604798 |
actcttggggacttctttaacaaaatacttcataaaatatcatcgttttaaaaattcttccaatttctaatataaacaatagagttgaattattttctaa |
24604897 |
T |
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| Q |
663 |
aattacactgcctcataaaatattatcatccaaacatattcgcaaacttaatttannnnnnnnnnnnnnnnnn-catagattctctccaccttaaataat |
761 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||| |
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| T |
24604898 |
aattacactgcctcataaaattttatcatccaaacatattcgcaaacttaatttaatttttttttgaattttttcacatattctctccaccataaataat |
24604997 |
T |
|
| Q |
762 |
cttattcgaaggaccgttagacactaaatataaacatctttcacgaattccaacctacactagtctttttattcacacactctagtaaatgaacttttca |
861 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |
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| T |
24604998 |
cttattcgaaggactgttagacactaaatatagacatctttcacgaattccaacctacaccagtctttttcttcacacaatctagtaaatgaacttttca |
24605097 |
T |
|
| Q |
862 |
ttgtgtgcatgtaacaaaagtaaaaaagaccatcgaatttatttttgaaatttgaaatcgagacaagaagccataatgggcatgtatgtgttttgtctct |
961 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24605098 |
ttgtgtgcatgtaacaaaagtaaaaaagaccatcgaatttatttttgaaatttgaaatcgagacaagaagccataatgggcatgtatgtgttttgtctct |
24605197 |
T |
|
| Q |
962 |
gct |
964 |
Q |
| |
|
||| |
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|
| T |
24605198 |
gct |
24605200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 581 - 627
Target Start/End: Complemental strand, 47108417 - 47108371
Alignment:
| Q |
581 |
aacaaaatacttcataaaatatcatagttttaaaaattcttccaatt |
627 |
Q |
| |
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|||||||||||||||||| | |||| |||||||||||||||| |||| |
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| T |
47108417 |
aacaaaatacttcataaattttcatcgttttaaaaattcttcaaatt |
47108371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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