View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_11 (Length: 522)
Name: NF9249_low_11
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 52910848 - 52910344
Alignment:
| Q |
9 |
aatgatctgttgatctattccattgtcttctattcaccatgtatgattttattcacaggatgaggtatttgaattgtctttgcatcacaatttgtgattg |
108 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910848 |
aatgatctgttgatctattcaatt-tcttttattcaccatgtatgattttattcacaggatgaggtatttgaattgtctttgcatcacaatttgtgattg |
52910750 |
T |
|
| Q |
109 |
tcttcctttcttaaaaaggaagaaaaaagagtacttgagaac---------tcatctaaccttaactaacaaataattacgagtatcaatagctcactgt |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910749 |
tcttcctttcttaaaaaggaagaaaaaagattacttgagaaccaagctaactcatctaaccttaactaacaaataattacgagtatcaatagctcactgt |
52910650 |
T |
|
| Q |
200 |
caattggcattacagttagaagtagttagaattggtatcacgcttgtaatcctagtctagagctaacctataagtttgattcatcactattgtaacattt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910649 |
caattggcattacagttagaagtagttagaattggtatcacgcttgttatcctagtctagagctaacctataagtttgattcatcactattgtaacattt |
52910550 |
T |
|
| Q |
300 |
gattcattgaaaaataatacaatgctttccatttctctctttagtttcttcatttcaaatcatttctccctttagtttcataatactttcaaagactgaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910549 |
gattcattgaaaaataatacaatgctttccatttctctctttagtttcttcatttcaaatcatttctccctttagtttcataatactttcaaagactgaa |
52910450 |
T |
|
| Q |
400 |
gcatcgtttccatgcgttcctttcattcttttttgaaatatatttagaagtttcaaaaacaaaattctacataaattcatcataacgtaggaaaagttac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52910449 |
gcatcgtttccatgcgttcctttcattcttttttgaaatatatttagaagtttcaaaaacaaaattctacataaattcatcataacgtaggaaaagttac |
52910350 |
T |
|
| Q |
500 |
atttat |
505 |
Q |
| |
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|||||| |
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| T |
52910349 |
atttat |
52910344 |
T |
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