View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_13 (Length: 519)
Name: NF9249_low_13
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 48385852 - 48385347
Alignment:
| Q |
1 |
ggagcacatacatgcagttgcatagcagtgagaaagaatcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48385852 |
ggagcacatacatgcagttgcatagcagtgagaaagaatcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaa |
48385753 |
T |
|
| Q |
101 |
ggttgtatcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48385752 |
ggttgtatcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgt |
48385653 |
T |
|
| Q |
201 |
gtgagtaacaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48385652 |
gtgagtaacaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccaaaattaggatgccagtattgtggattcttctccaaa |
48385553 |
T |
|
| Q |
301 |
tacctagttttgaaaaagacattagaacaaagaaatgcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48385552 |
tacctagttttgaaaaagacattagaacaaagaaattcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaactccactagc |
48385453 |
T |
|
| Q |
401 |
ttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttctgtaa |
500 |
Q |
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| T |
48385452 |
ttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttttcaaccatatttgggcttctgtaa |
48385353 |
T |
|
| Q |
501 |
taattg |
506 |
Q |
| |
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|||||| |
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| T |
48385352 |
taattg |
48385347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 506
Target Start/End: Complemental strand, 48366284 - 48365804
Alignment:
| Q |
39 |
tcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttcttt |
138 |
Q |
| |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | || |
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| T |
48366284 |
tcatcatttgagagaacttgtgtcaggttctatgtgtctgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattctttta |
48366185 |
T |
|
| Q |
139 |
acttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttacat |
238 |
Q |
| |
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|||||||| |||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
48366184 |
acttccatcactagttcacttttcctattcaccttctctccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacat |
48366085 |
T |
|
| Q |
239 |
tttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaatacc-----------tagttttgaaaaagacattagaa |
327 |
Q |
| |
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|||||||||| | |||||||| | |||||||||||||||||||||||||||| ||||| |||| || |||| || || |||||| || |
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| T |
48366084 |
tttcaatctctattactaccaagctgaaattaggatgccagtattgtggattcctctccgcgtacctattttttatttatttttaaacaaaacattacaa |
48365985 |
T |
|
| Q |
328 |
caaagaaatgcattgaaatactaagattacggcaataagacttgttccaaattgaggataaaac--tccactagcttacctcttcactttttctttcagt |
425 |
Q |
| |
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||||||||| ||| ||||| |||||||| |||| |||| |||||||||||| |||||||| | || ||||||||||| | | ||||||||||| | |
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| T |
48365984 |
caaagaaatacatagaaatcttaagattaaagcaacaagagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttctttcaat |
48365885 |
T |
|
| Q |
426 |
gccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttctgtaataattg |
506 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
48365884 |
gctccaattttctctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttctgtaataattg |
48365804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 48396236 - 48396534
Alignment:
| Q |
8 |
atacatgcagttgcatagcagtgagaaagaatcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaaggttgta |
107 |
Q |
| |
|
||||||| |||| ||||| | |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
48396236 |
atacatgaagtttcatagtaatgagtaagaatcatcacttgagataacttgaatcaggttccatgtgtctgagatgaacaccttgcggaataaggtagta |
48396335 |
T |
|
| Q |
108 |
tcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttctctccaaactcttgaaaattcattgtgtgagta |
207 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
48396336 |
tctgatattgagctcttcaaatattttctttacttccatcactaattcacttctccgcttagtcttctccccaaattcttgaaagttcattgtgtgagta |
48396435 |
T |
|
| Q |
208 |
acaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccgaaattaggatgccagtattgtggattcttctccaaataccta |
306 |
Q |
| |
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||| |||||||||||||||| ||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
48396436 |
acataaagacccatcttaatcttatttacattttcaatctccttcactgccaaactgaaactaggatgccagtattgtggattcctctccaaataccta |
48396534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 511
Target Start/End: Original strand, 48396656 - 48396770
Alignment:
| Q |
397 |
tagcttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttgtcaaccatatttgggcttct |
496 |
Q |
| |
|
||||||||||||| | |||||| ||||||| || ||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
48396656 |
tagcttacctctttattttttcattcagtgatccgattttctctgctgacgttgtaaaatcaactgagaactctacactgtcacccatattagggcttct |
48396755 |
T |
|
| Q |
497 |
gtaataattgatgat |
511 |
Q |
| |
|
|||||||||| |||| |
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| T |
48396756 |
gtaataattgctgat |
48396770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 33618667 - 33618735
Alignment:
| Q |
34 |
aagaatcatcatttgagataacttgcatcaggttccatgtgtctgagatgaacaccttgtggaagaagg |
102 |
Q |
| |
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||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
33618667 |
aagaatcatcatttgagtaaacttgtattaggttccatgtgtctaagatgaacaccttgtggaataagg |
33618735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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