View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_16 (Length: 478)
Name: NF9249_low_16
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 36 - 460
Target Start/End: Original strand, 10215152 - 10215578
Alignment:
| Q |
36 |
aataaaaacattcaatgggatacaatatgagctaatacatgtca-ttttccttggaaatggaggaatcaaaggcttcatataata-ctatagtaatttta |
133 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10215152 |
aataaatacattcaatgggatacagtatgagctaatacatgtcaattttccttggaaatggaggaatcaaaggcttcatataataactatagtaatttta |
10215251 |
T |
|
| Q |
134 |
tcgttgtatttttaaaaggataaactagta-ttaaaagcctgatagagcaaattgtgtgtagtttatgctaatcgtgcaaatttatggggtaagagcgtc |
232 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10215252 |
tcgttgtatttttaaaaggataaactagtaattaaaagcttgatagagcaaattgtgtgtagtttatgctaatcgtgcaaatttatagggtaagagcgtc |
10215351 |
T |
|
| Q |
233 |
gtgccatatagcacccccttgatataattaattaataaatatttcttcttgattaaataaaaatagaaaaacaatcacacgccttatttaattttggttt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10215352 |
gtgccatatagcacccccttgatataattaattaataaatatttcttcttgattaaataaaaatagaaaaacaatcacacgccttatttaattttggttt |
10215451 |
T |
|
| Q |
333 |
aagggtggaaaaactgtagtatgagataatgttttggggaagtcaacgtgnnnnnnnnnnggagaaaatgaagtaaaatacaatgtgaatatgtgtaaga |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
10215452 |
aagggtggaaaaactgtagtatgagataatgttttgggtaagtcaacgtg-aaaaaaacaggagaaaatgaagtagaatacaatgtgaatatgtgtaaga |
10215550 |
T |
|
| Q |
433 |
agattcaaatcctttaaataaatggtct |
460 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10215551 |
agattcaaatcctttaaataaatggtct |
10215578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 24908091 - 24908204
Alignment:
| Q |
136 |
gttgtatttttaaaaggataaactagtattaaaagcctgatagagcaaattgtgtgtag--tttatgctaatcgtgcaaatttatggggtaagagcgtcg |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||| || |
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| T |
24908091 |
gttgtatttataaaaggataaactagtattcaaagcctaatagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgccg |
24908190 |
T |
|
| Q |
234 |
tgccatatagcacc |
247 |
Q |
| |
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||| |||||||||| |
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| T |
24908191 |
tgctatatagcacc |
24908204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 21383569 - 21383690
Alignment:
| Q |
130 |
tttatcgttgtatttttaaaaggataaactagtattaaaagcctgatagagcaaattgt--gtgtag--tttatgctaatcgtgcaaatttatggggtaa |
225 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||| |||||| | |||||||| || |||||| || |
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| T |
21383569 |
tttatagttgtatttttaaaaggataaactagtattcaaagcctaatagagcaaattgtacgagtagattttatggcagtcgtgcaatttcatggggaaa |
21383668 |
T |
|
| Q |
226 |
gagcgtcgtgccatatagcacc |
247 |
Q |
| |
|
||| |||||| |||||||||| |
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|
| T |
21383669 |
gaggatcgtgctatatagcacc |
21383690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 24908209 - 24908282
Alignment:
| Q |
176 |
tagagcaaattgtgtgtag--tttatgctaatcgtgcaaatttatggggtaagagcgtcgtgccatatagcacc |
247 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||| ||| ||||| ||||||||||||| |||||||||| |
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|
| T |
24908209 |
tagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcacc |
24908282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 37501953 - 37502066
Alignment:
| Q |
136 |
gttgtatttttaaaaggataaactagtattaaaagcctgatagagcaaattgtgtgtag--tttatgctaatcgtgcaaatttatggggtaagagcgtcg |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||| ||||| ||||||| ||| ||||| |||||||||| |
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|
| T |
37501953 |
gttgtatttataaaaggataaactagtattcaaagcctaatagagaaaattgtgtgtagattttttgctagtcgtgcagattcgtggggaaagagcgtcg |
37502052 |
T |
|
| Q |
234 |
tgccatatagcacc |
247 |
Q |
| |
|
||| |||||||||| |
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| T |
37502053 |
tgctatatagcacc |
37502066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 3443936 - 3444049
Alignment:
| Q |
136 |
gttgtatttttaaaaggataaactagtattaaaagcctgatagagcaaattgtgtgtag--tttatgctaatcgtgcaaatttatggggtaagagcgtcg |
233 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| |||||||||||| ||| ||| ||||||||| ||||||| ||| ||||| |||||||||| |
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| T |
3443936 |
gttgtatttataaaaggataaattagtattcaaagcctaatagagcaaattatgtatagattttatgctagtcgtgcagattcgtggggaaagagcgtcg |
3444035 |
T |
|
| Q |
234 |
tgccatatagcacc |
247 |
Q |
| |
|
||| |||||||||| |
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|
| T |
3444036 |
tgctatatagcacc |
3444049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 21522378 - 21522308
Alignment:
| Q |
177 |
agagcaaattgtgtgtagtttatgctaatcgtgcaaatttatggggtaagagcgtcgtgccatatagcacc |
247 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| |||||| ||||| ||||||||||||||| |||||||| |
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| T |
21522378 |
agagcaaattaggtgtagtttgtgctggtcgtacaaattcgtggggaaagagcgtcgtgccaaatagcacc |
21522308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 32827152 - 32827082
Alignment:
| Q |
177 |
agagcaaattgtgtgtagtttatgctaatcgtgcaaatttatggggtaagagcgtcgtgccatatagcacc |
247 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| |||||| |||||| |||||||||||| || |||||||| |
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| T |
32827152 |
agagcaaattgggtgtagtttgtgctggtcggacaaattcatggggaaagagcgtcgtgtcaaatagcacc |
32827082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 1877434 - 1877374
Alignment:
| Q |
177 |
agagcaaattgtgtgtagtttatgctaatcgtgcaaatttatggggtaagagcgtcgtgcc |
237 |
Q |
| |
|
||||||||||| ||||||||| |||| |||| |||||| ||||| |||||||||||||| |
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|
| T |
1877434 |
agagcaaattgggtgtagtttgtgctggtcgtacaaattcgtggggaaagagcgtcgtgcc |
1877374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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