View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_17 (Length: 295)
Name: NF9249_low_17
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 8337044 - 8337327
Alignment:
| Q |
14 |
attatactctccataagtagataatttgaaatttatataacgtatatttggtaatgtaatt----gttaatggannnnnnnnnnnnnngaggaaaattgt |
109 |
Q |
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| T |
8337044 |
attatactctccataagtagataatttgaaatttatataacgtatatttggtaatgtaattaattgttaatgg--tttttttttttttgaggaaaattgt |
8337141 |
T |
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| Q |
110 |
taatggaaatgattctcgagatactttatattttagatgctatggtatatgataaaatcaaattatannnnnnngctttaaatcatttttcatcattttg |
209 |
Q |
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| T |
8337142 |
taatggaaatgattctcgagatattttatattttagatgttatggtatatgataaaatcaaattatatttttttgctttaaatcatttttcattattttg |
8337241 |
T |
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| Q |
210 |
atttaatattctcgagaaaaaattattctcaagagattttatattttagaagttatggtaaatagtaaaatcaaaatcaaatttga |
295 |
Q |
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| T |
8337242 |
atttaatattctcgagaaaaaatgattctcaagagattttatattttagaagttatggtaaatagtaaaatcaaaatcaaatttga |
8337327 |
T |
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