View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9249_low_2 (Length: 941)

Name: NF9249_low_2
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9249_low_2
NF9249_low_2
[»] chr7 (6 HSPs)
chr7 (18-539)||(30593982-30594503)
chr7 (581-928)||(30593576-30593925)
chr7 (18-85)||(6846131-6846197)
chr7 (18-85)||(6852798-6852864)
chr7 (18-85)||(6892293-6892359)
chr7 (225-459)||(44434674-44434902)
[»] chr4 (2 HSPs)
chr4 (383-457)||(17554892-17554964)
chr4 (266-295)||(4780687-4780716)
[»] chr6 (1 HSPs)
chr6 (266-324)||(26209124-26209182)
[»] chr3 (3 HSPs)
chr3 (226-296)||(1476728-1476798)
chr3 (225-458)||(54356143-54356370)
chr3 (266-295)||(11633095-11633124)
[»] chr1 (2 HSPs)
chr1 (266-458)||(6844336-6844521)
chr1 (292-447)||(33240964-33241113)
[»] chr8 (2 HSPs)
chr8 (331-458)||(1153758-1153882)
chr8 (235-295)||(9269264-9269324)
[»] chr2 (1 HSPs)
chr2 (382-458)||(9420132-9420208)
[»] chr5 (2 HSPs)
chr5 (223-380)||(5246463-5246616)
chr5 (225-295)||(25458518-25458588)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 30594503 - 30593982
Alignment:
Q  18 attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatgnnnnnnngcataaactcaaatgttacattgac 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||    
T  30594503 attctggaggcactggcagatgtattttgagtgatatttgtaacttcagtttccatgaaactcaaatgtttttttgtataaactcaaatgttacattgac 30594404  T
Q  118 agctatatttcaatatgcaacctatatttcacgggatggaggatacactcgtgacaacataaataacatttgttggacggaggataattatcaaaagatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  30594403 agctatatttcaatatgcaacctatatttcacgggatggaggatacactcgtgacaacataaataacttttgttggacggaagataattatcaaaagatt 30594304  T
Q  218 catgcaatttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatatagttggatttaaacaaattta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30594303 catgcaatttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatatagttgaatttaaacaaattta 30594204  T
Q  318 attattttttctataaagaaatgatttttattccaatgaacaaccacaaaaaagattatgattatttttataaaatctctaaaaatataatcattagatt 417  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30594203 attattttttctataaagaaatgatttttattccaataaacaaccacaaaaaagattatgattatttttataaaatctctaaaaatataatcattagatt 30594104  T
Q  418 gttgaatatcaaaatcccttttaatttaatatgtaacaaactgattataacttttaaaaataatcactttttacaacnnnnnnnnncattttaaagagta 517  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||         ||||||||||||||    
T  30594103 gttgaatatcaaaatcccttttattttaatatgtaacaaactggttataactttttaaaataatcactttttacaacaaaaaaaaacattttaaagagta 30594004  T
Q  518 ttgtatctgtctattatggttt 539  Q
    ||||||||||||||||||||||    
T  30594003 ttgtatctgtctattatggttt 30593982  T

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Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 581 - 928
Target Start/End: Complemental strand, 30593925 - 30593576
Alignment:
Q  581 gcatgacctaaaatttaaatttctagtcgtaaagtcattgtaatttcaatgaagaatattaataaatgcctcaaagatattttttaaagactttaaaaag 680  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||    
T  30593925 gcatgacccaaaatttaaatttctagtcgtaaagtcattgtaatttcaatgaaaaatattaataaatgcatca--gatattttttaaagactttaaaaag 30593828  T
Q  681 taannnnnnnnatagaaattgtgccttgaatgcatcaagtattaaaatttccaataaataatttgttaattgagaattagcaaaacccaatttcataaga 780  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30593827 taattttttt-atagaaattgtgccttgaatgcatcaagtattaaaatttccaataaataatttgttaattgagaattagcaaaacccaatttcacaaga 30593729  T
Q  781 caa--------ccttagaccgcgtaaccactaacaaccatatccggaacaaaataataacttacgcacgcaggaacgaacaatctgtctctagtttcttt 872  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  30593728 caagtagacaaccttagaccgcgtaaccactaacaaccatatccggaacaaaataa---cttacgcacgcaggaacgaacaatctgtctctagtttcttt 30593632  T
Q  873 cagtttgaagcgactcgtttaagtcatggaggttgttgtttcacaccctctgtgct 928  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30593631 cagtttgaagcgactcgtttaagtcatggaggttgttgtttcacaccctctgtgct 30593576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6846131 - 6846197
Alignment:
Q  18 attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg 85  Q
    |||||||||||||||||||||||| |||||||| | |||||||||  ||||| |||||||||||||||    
T  6846131 attctggaggcactggcagatgta-tttgagtgatgtttgtaactcaagttttcatgaaactcaaatg 6846197  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6852798 - 6852864
Alignment:
Q  18 attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg 85  Q
    |||||||||||||||||||||||| |||||||| | |||||||||  ||||| |||||||||||||||    
T  6852798 attctggaggcactggcagatgta-tttgagtgatgtttgtaactcaagttttcatgaaactcaaatg 6852864  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 6892293 - 6892359
Alignment:
Q  18 attctggaggcactggcagatgtattttgagtggtatttgtaacttcagtttccatgaaactcaaatg 85  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||  |||| |||||||||||||||    
T  6892293 attctggaggcactggcagatgta-tttgagtgatgtttgtaacttaggttttcatgaaactcaaatg 6892359  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 225 - 459
Target Start/End: Original strand, 44434674 - 44434902
Alignment:
Q  225 tttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatatagttggatttaaacaaatttaattattt 324  Q
    ||||||||||||||||||  || | || |  ||||||| | | ||||||| | |||||| ||| || |||||||||| ||  ||||||| | ||||||||    
T  44434674 tttttagaggagagagaaattatgaattaaaagattgaaatagttttgta-tcaaaaatatctcttttatatagttgtatccaaacaaactaaattattt 44434772  T
Q  325 tttctataaagaaatgatttttattccaatgaacaaccacaaaaaagattatgattatttttataaaatctctaaaaatataatcattagattgttgaat 424  Q
     || || |||  | ||||||||||| |  | ||||| ||||||| ||||| | |||  ||| ||||||||||||||| |||||||  || ||| ||  ||    
T  44434773 gttttaaaaa--agtgatttttattacggtaaacaaacacaaaatagattctaatt--tttcataaaatctctaaaa-tataatctctatattattttat 44434867  T
Q  425 atcaaaatcccttttaatttaatatgtaacaaact 459  Q
     |||||||| |||||| ||||||||||||||||||    
T  44434868 gtcaaaatcacttttattttaatatgtaacaaact 44434902  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 383 - 457
Target Start/End: Original strand, 17554892 - 17554964
Alignment:
Q  383 ttttataaaatctctaaaaatataatcattagattgttgaatatcaaaatcccttttaatttaatatgtaacaaa 457  Q
    ||||||||||||| ||||||||  ||| ||| ||| || |||||||||||| |||||| ||||||||||||||||    
T  17554892 ttttataaaatctttaaaaata--atctttaaattattcaatatcaaaatcacttttattttaatatgtaacaaa 17554964  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 4780687 - 4780716
Alignment:
Q  266 aattttgtaataaaaaatctcttttatata 295  Q
    ||||||||||||||||||||||||||||||    
T  4780687 aattttgtaataaaaaatctcttttatata 4780716  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 26209182 - 26209124
Alignment:
Q  266 aattttgtaataaaaaatctcttttatatatagttggatttaaacaaatttaattattt 324  Q
    |||||||||| |||||||| ||| |||||||||||| || |||||||||| ||||||||    
T  26209182 aattttgtaacaaaaaatcccttatatatatagttgtatctaaacaaattaaattattt 26209124  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 1476728 - 1476798
Alignment:
Q  226 ttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatat 296  Q
    ||||||||||||||||| |||| | |||  ||||| ||| |||||||||| ||||||||||||||| ||||    
T  1476728 ttttagaggagagagaaaataaatgtcaaaagatttagataattttgtaacaaaaaatctcttttacatat 1476798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 458
Target Start/End: Complemental strand, 54356370 - 54356143
Alignment:
Q  225 tttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatatagttggatttaaacaaatttaattattt 324  Q
    |||||||||||||||||| ||| |  | |  |||||||   |||||||||| |||||||| ||||||||||  |||  ||  ||||||| | ||||||||    
T  54356370 tttttagaggagagagaaaatatgatttaaaagattgaactaattttgtaacaaaaaatcccttttatata--gttatatccaaacaaactaaattattt 54356273  T
Q  325 tttctataaagaaatgatttttattccaatgaacaaccacaaaaaagattatgattatttttataaaatctctaaaaatataatcattagattgttgaat 424  Q
     || || ||| || |||||||||||    | ||||| ||||||| ||||| |||||  ||| ||||||||||||||| |||||||  || ||| || |||    
T  54356272 gtt-taaaaaaaagtgatttttattatggtaaacaaacacaaaatagattctgatt--tttcataaaatctctaaaa-tataatctctaaattatttaat 54356177  T
Q  425 atcaaaatcccttttaatttaatatgtaacaaac 458  Q
     |||||||| |||||| ||||||  |||||||||    
T  54356176 gtcaaaatcacttttactttaatccgtaacaaac 54356143  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 11633124 - 11633095
Alignment:
Q  266 aattttgtaataaaaaatctcttttatata 295  Q
    ||||||||||||||||||||||||||||||    
T  11633124 aattttgtaataaaaaatctcttttatata 11633095  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 458
Target Start/End: Complemental strand, 6844521 - 6844336
Alignment:
Q  266 aattttgtaataaaaaatctcttttatatatagttggatttaaacaaatttaattattttttctataaagaaatgatttttattccaatgaacaaccaca 365  Q
    |||||||||| |||||||||||||||||||  |||| ||  ||||||| |  ||||||| || || ||| || ||||||||||| |  | ||||| | ||    
T  6844521 aattttgtaacaaaaaatctcttttatata--gttgcatccaaacaaactagattatttgtt-taaaaa-aagtgatttttattacggtaaacaaacgca 6844426  T
Q  366 aaaaagattatgattatttttataaaatctctaaaaatataatcattagattgttgaatatcaaaatcccttttaatttaatatgtaacaaac 458  Q
    ||| ||||| |||||  ||||||||||||||| |||||||||||  || ||| ||  || |||||||| |||||| |||||| ||||||||||    
T  6844425 aaatagattctgatt--ttttataaaatctct-aaaatataatctctaaattattttatgtcaaaatcacttttattttaatctgtaacaaac 6844336  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 292 - 447
Target Start/End: Complemental strand, 33241113 - 33240964
Alignment:
Q  292 tatatagttggatttaaacaaatttaattattttttctataaagaaatgatttttattccaatgaacaaccacaaaaaagattatgattatttttataaa 391  Q
    ||||| |||| || |||||||| | |||||||| ||   |||| |||||||||||||| | || ||||| ||||||| ||||| ||||  |||| |||||    
T  33241113 tatatggttgaatctaaacaaactaaattatttgtt---taaaaaaatgatttttattacgataaacaaacacaaaatagattctgat--ttttcataaa 33241019  T
Q  392 atctctaaaaatataatcattagattgttgaatatcaaaatcccttttaatttaat 447  Q
    |||||| |||||||||||  || ||| ||  || |||||||| |||||| ||||||    
T  33241018 atctct-aaaatataatctctaaattattttatgtcaaaatcacttttattttaat 33240964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 331 - 458
Target Start/End: Original strand, 1153758 - 1153882
Alignment:
Q  331 taaagaaatgatttttattccaatgaacaaccacaaaaaagattatgattatttttataaaatctctaaaaatataatcattagattgttgaatatcaaa 430  Q
    |||| |||||||||||||| |  | ||||| | ||||| ||||| |||||  ||| ||||||||||||||| |||||||  || ||| ||  ||||||||    
T  1153758 taaaaaaatgatttttattacggtaaacaaacgcaaaatagattctgatt--tttcataaaatctctaaaa-tataatctctaaattattttatatcaaa 1153854  T
Q  431 atcccttttaatttaatatgtaacaaac 458  Q
    ||| |||||| |||||| ||||||||||    
T  1153855 atcacttttattttaatctgtaacaaac 1153882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 9269264 - 9269324
Alignment:
Q  235 agagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatata 295  Q
    |||||||| |||||| |||  || |||||  ||||||||||||||||||||||||||||||    
T  9269264 agagagaaaataagtgtcaaaagtttgagttaattttgtaataaaaaatctcttttatata 9269324  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 9420208 - 9420132
Alignment:
Q  382 tttttataaaatctctaaaaatataatcattagattgttgaatatcaaaatcccttttaatttaatatgtaacaaac 458  Q
    |||| ||||||||||||||||||||||| | | ||| || ||| |||||||| |||||| ||||||  |||||||||    
T  9420208 ttttcataaaatctctaaaaatataatcttcaaattatttaatgtcaaaatcacttttattttaatccgtaacaaac 9420132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 5246616 - 5246463
Alignment:
Q  223 aatttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatatatagttggatttaaacaaatttaattat 322  Q
    |||||||||| ||||||||| |||||  | |  |||||||   |||||||||| |||||||||||||||||||  |||| ||  ||||||| | ||||||    
T  5246616 aatttttagatgagagagaaaataaggtttaaaagattgaactaattttgtaaaaaaaaatctcttttatata--gttgtatccaaacaaactaaattat 5246519  T
Q  323 tttttctataaagaaatgatttttattccaatgaacaaccacaaaaaagattatgatt 380  Q
    || || || ||| || ||||||||||| | || ||||| ||||||| ||||| |||||    
T  5246518 ttgtt-ta-aaataagtgatttttattacgataaacaaacacaaaatagattctgatt 5246463  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 25458518 - 25458588
Alignment:
Q  225 tttttagaggagagagaagataagtatcatgagattgagacaattttgtaataaaaaatctcttttatata 295  Q
    |||||||||||||||||| ||| | ||||  |||||||   |||||||||| |||||||| ||||||||||    
T  25458518 tttttagaggagagagaaaatatggatcaaaagattgaactaattttgtaacaaaaaatcgcttttatata 25458588  T

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