View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9249_low_21 (Length: 280)

Name: NF9249_low_21
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9249_low_21
NF9249_low_21
[»] chr6 (8 HSPs)
chr6 (1-262)||(20660806-20661066)
chr6 (74-176)||(13353209-13353310)
chr6 (74-176)||(33796334-33796435)
chr6 (74-176)||(4868787-4868889)
chr6 (73-196)||(33494546-33494668)
chr6 (156-196)||(7638803-7638843)
chr6 (74-168)||(8026397-8026490)
chr6 (74-176)||(12330154-12330255)
[»] chr7 (6 HSPs)
chr7 (74-176)||(1596602-1596702)
chr7 (74-176)||(25620144-25620245)
chr7 (74-176)||(3038059-3038160)
chr7 (74-176)||(29469613-29469714)
chr7 (74-176)||(26239890-26239992)
chr7 (74-176)||(21861302-21861403)
[»] chr2 (8 HSPs)
chr2 (74-176)||(2029777-2029878)
chr2 (74-196)||(40379399-40379520)
chr2 (74-176)||(14466385-14466486)
chr2 (74-116)||(3738941-3738981)
chr2 (74-134)||(2030012-2030071)
chr2 (95-176)||(16419294-16419376)
chr2 (74-169)||(29718336-29718430)
chr2 (74-176)||(17719408-17719509)
[»] chr8 (9 HSPs)
chr8 (74-199)||(5932136-5932260)
chr8 (74-176)||(11232169-11232270)
chr8 (74-176)||(11232404-11232505)
chr8 (74-176)||(39052904-39053005)
chr8 (74-134)||(5931966-5932025)
chr8 (74-134)||(37001472-37001531)
chr8 (74-134)||(39960199-39960259)
chr8 (74-134)||(3157344-3157403)
chr8 (74-176)||(24532396-24532497)
[»] chr5 (8 HSPs)
chr5 (74-194)||(24528548-24528667)
chr5 (74-176)||(9368603-9368704)
chr5 (74-176)||(18333674-18333776)
chr5 (74-176)||(41666967-41667069)
chr5 (74-176)||(15480330-15480431)
chr5 (74-187)||(2063698-2063809)
chr5 (74-166)||(8081098-8081190)
chr5 (156-196)||(7133965-7134005)
[»] chr1 (6 HSPs)
chr1 (73-196)||(30369842-30369964)
chr1 (74-176)||(4112981-4113082)
chr1 (90-180)||(25145691-25145782)
chr1 (74-167)||(39348337-39348428)
chr1 (156-189)||(27413436-27413469)
chr1 (76-178)||(35892301-35892402)
[»] scaffold0519 (1 HSPs)
scaffold0519 (74-176)||(1924-2025)
[»] chr3 (9 HSPs)
chr3 (74-176)||(54567900-54568001)
chr3 (73-176)||(45828026-45828128)
chr3 (74-168)||(1723059-1723152)
chr3 (74-175)||(4155332-4155432)
chr3 (74-134)||(50052556-50052616)
chr3 (74-168)||(11589793-11589886)
chr3 (74-176)||(22729108-22729209)
chr3 (74-176)||(35038403-35038504)
chr3 (74-176)||(54368524-54368625)
[»] chr4 (11 HSPs)
chr4 (145-196)||(6218282-6218333)
chr4 (74-194)||(11036703-11036822)
chr4 (76-172)||(22231287-22231382)
chr4 (74-176)||(7926336-7926437)
chr4 (74-176)||(21041359-21041460)
chr4 (74-166)||(1518172-1518263)
chr4 (74-134)||(21498362-21498421)
chr4 (74-176)||(35788667-35788769)
chr4 (73-168)||(35796960-35797054)
chr4 (74-172)||(40717420-40717517)
chr4 (78-176)||(50543542-50543639)
[»] scaffold0692 (1 HSPs)
scaffold0692 (74-176)||(5729-5830)
[»] scaffold0129 (1 HSPs)
scaffold0129 (74-176)||(14311-14412)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 20660806 - 20661066
Alignment:
Q  1 tttaatgttcataaagctagtatctttctatgcttgacaatccaattcaagaagattacttgtgaagattaaatgtttataagtggggaggcaatcctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20660806 tttaatgttcataaagctagtatctttctatgcttgacaatccaattcaaaaagattacttgtgaagattaaatgtttataagtggggaggcaatcctca 20660905  T
Q  101 catcacaaa-ccggtttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaagatctattagatcacctactatcacgt 199  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  20660906 catcacaaacccggtttgtggggttatgttaggcctaacgacaaattctatgattgtatcagagcctctccaagatctattggatcacctactatcaggt 20661005  T
Q  200 atccagggccacacaccatttatatccaaacaacaatctcaatagtgttaaataaatgtttat 262  Q
    |||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20661006 atccggggc--cacaccatttatatccaaacaacaatctcaatagtgttaaataaatgtttat 20661066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 13353209 - 13353310
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  13353209 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 13353306  T
Q  173 gatc 176  Q
    ||||    
T  13353307 gatc 13353310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 33796334 - 33796435
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  33796334 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 33796431  T
Q  173 gatc 176  Q
    ||||    
T  33796432 gatc 33796435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 4868889 - 4868787
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct-ctcca 171  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | ||||| ||| |||||||||||| |||||    
T  4868889 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctcca 4868792  T
Q  172 agatc 176  Q
    |||||    
T  4868791 agatc 4868787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 33494546 - 33494668
Alignment:
Q  73 atgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctcca 171  Q
    ||||||||||||||||  ||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | ||||| ||| |||||||| ||||| |     
T  33494546 atgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagaacctcttcg 33494643  T
Q  172 agatctattagatcacctactatca 196  Q
    ||||| ||| | |||||| ||||||    
T  33494644 agatccattgggtcacctgctatca 33494668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 7638843 - 7638803
Alignment:
Q  156 tatcagagcctctccaagatctattagatcacctactatca 196  Q
    ||||||||| ||||||||||||||| |||||||| ||||||    
T  7638843 tatcagagcttctccaagatctattggatcacctgctatca 7638803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 8026397 - 8026490
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctct 168  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | |||||  || ||||||||||||||    
T  8026397 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 8026490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 12330255 - 12330154
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  |||| |||||| |||||| ||||||| ||| |||| | ||||||| ||| |  | |||||  || ||||||||||||||||||    
T  12330255 tgtttataagtgggg--gcaaccctcacctcacaagccggttttgtgaggttgtgttaggcccaaccacgatttctaatatggtatcagagcctctccaa 12330158  T
Q  173 gatc 176  Q
    ||||    
T  12330157 gatc 12330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 1596602 - 1596702
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggtttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaag 173  Q
    |||| ||||||||||  ||||||||||| | |||| ||||||||||||||| | ||||||||||| | || ||||| ||| |||||||||||||||||||    
T  1596602 tgttaataagtgggg--gcaatcctcaccttacaagccggtttgtggggttgtgttaggcctaaccacaatttctaagatggtatcagagcctctccaag 1596699  T
Q  174 atc 176  Q
    |||    
T  1596700 atc 1596702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 25620144 - 25620245
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  25620144 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaa 25620241  T
Q  173 gatc 176  Q
    ||||    
T  25620242 gatc 25620245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 3038160 - 3038059
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| |||  ||||||||||||| |||    
T  3038160 tgtttataagtgggg--gcaatcctcacgtcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagataatatcagagcctcttcaa 3038063  T
Q  173 gatc 176  Q
    ||||    
T  3038062 gatc 3038059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 29469613 - 29469714
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | |||||  || ||||||||||||||||||    
T  29469613 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctctccaa 29469710  T
Q  173 gatc 176  Q
    ||||    
T  29469711 gatc 29469714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 26239992 - 26239890
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggt-ttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct-ctcca 171  Q
    |||||||||||||||  ||||||||||| ||||||  |||| |||||||||| | |||| || ||| | || ||||| ||| |||||||||||| |||||    
T  26239992 tgtttataagtgggg--gcaatcctcacctcacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagatggtatcagagcctcctcca 26239895  T
Q  172 agatc 176  Q
    |||||    
T  26239894 agatc 26239890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 21861302 - 21861403
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||| ||  ||||||||||| | |||| ||||||| ||||| || | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  21861302 tgtttataagtgagg--gcaatcctcaccttacaagccggttttgtgggattgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 21861399  T
Q  173 gatc 176  Q
    ||||    
T  21861400 gatc 21861403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 2029777 - 2029878
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||  ||||||||||||| |||||| ||||||| |||||||| ||||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  2029777 tgtttataagtgg--aggcaatcctcacctcacaagccggttttgtggggttgttttaggcccaaccacgatttctaagatggtatcagagcctctccaa 2029874  T
Q  173 gatc 176  Q
    ||||    
T  2029875 gatc 2029878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 40379520 - 40379399
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| |||||||||||| |||||    
T  40379520 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctttccaa 40379423  T
Q  173 gatctattagatcacctactatca 196  Q
    |||| |||||  ||||| ||||||    
T  40379422 gatccattaggccacctgctatca 40379399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 14466486 - 14466385
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    ||||||||||||||   ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  14466486 tgtttataagtggga--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 14466389  T
Q  173 gatc 176  Q
    ||||    
T  14466388 gatc 14466385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 3738941 - 3738981
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt 116  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  3738941 tgtttataagtgggg--gcaatcctcacatcacaaaccggttt 3738981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 2030012 - 2030071
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    |||||||||||||  ||||||||||||| |||||| |||| ||||||||||| |||||||||    
T  2030012 tgtttataagtgg--aggcaatcctcacctcacaagccggttttgtggggttgttttaggcc 2030071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 16419294 - 16419376
Alignment:
Q  95 tcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaagatc 176  Q
    ||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||||||    
T  16419294 tcctcacctcacaagccggttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagcctctccaagatc 16419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 29718336 - 29718430
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctc 169  Q
    |||||||||||| ||  ||||||||||| |||||| |||| ||||||||||| | ||||||||||| |  | ||||| | | |||||||||||||||    
T  29718336 tgtttataagtgagg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagttggtatcagagcctctc 29718430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 17719408 - 17719509
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||| ||||| | || |||| ||| | || ||||| ||| |||||| || ||||||||    
T  17719408 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtcgggttgtgttcggcccaaccacaatttctaagatggtatcaaagtctctccaa 17719505  T
Q  173 gatc 176  Q
    ||||    
T  17719506 gatc 17719509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 5932260 - 5932136
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  |||| |||||| |||||| || |||| |||||||| | ||||||| ||| |  | || || ||| ||||||||||||||||||    
T  5932260 tgtttataagtgggg--gcaagcctcacctcacaagcctgttttgtggggttgtgttaggcccaaccaccatttttaagatggtatcagagcctctccaa 5932163  T
Q  173 gatctattagatcacctactatcacgt 199  Q
    |||| ||| || |||||||||||||||    
T  5932162 gatccattggaccacctactatcacgt 5932136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 11232270 - 11232169
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  11232270 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 11232173  T
Q  173 gatc 176  Q
    ||||    
T  11232172 gatc 11232169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 11232505 - 11232404
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  11232505 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 11232408  T
Q  173 gatc 176  Q
    ||||    
T  11232407 gatc 11232404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 39053005 - 39052904
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| |||| |||||||||||||    
T  39053005 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaacaacgatttctaagatggtattagagcctctccaa 39052908  T
Q  173 gatc 176  Q
    ||||    
T  39052907 gatc 39052904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 5932025 - 5931966
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||||| |||||||    
T  5932025 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttatgttaggcc 5931966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 37001472 - 37001531
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    ||||||||||||||||  ||||||||||||||||| |||| ||||||||||| | |||||||    
T  37001472 tgtttataagtgggga--caatcctcacatcacaagccggttttgtggggttgtgttaggcc 37001531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 39960199 - 39960259
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    ||||||||||||||| |||||||||||| |||||| |||| ||||||||||| | |||||||    
T  39960199 tgtttataagtgggg-ggcaatcctcacctcacaagccggttttgtggggttgtgttaggcc 39960259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 3157403 - 3157344
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggtttgtggggttattttaggcc 134  Q
    ||||||||||||||| |||||||||||| |||||| | | ||||||||||| | |||||||    
T  3157403 tgtttataagtgggg-ggcaatcctcacctcacaagctgttttgtggggttgtgttaggcc 3157344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 24532497 - 24532396
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  |||||| |||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||| || |||    
T  24532497 tgtttataagtgggg--gcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagccccttcaa 24532400  T
Q  173 gatc 176  Q
    ||||    
T  24532399 gatc 24532396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 24528548 - 24528667
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| |||||||||||||||||     
T  24528548 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcctctccat 24528645  T
Q  173 gatctattagatcacctactat 194  Q
    |||| ||| || ||||| ||||    
T  24528646 gatccattggaccacctgctat 24528667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 9368603 - 9368704
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||  ||||||||||||| |||||| ||||||| |||||||| | ||||||| ||| | || ||||| | | |||||||||||||| |||    
T  9368603 tgtttataagtgg--aggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccataatttctaaggtggtatcagagcctcttcaa 9368700  T
Q  173 gatc 176  Q
    ||||    
T  9368701 gatc 9368704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 18333776 - 18333674
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    ||||||||||||||| || |||| |||| |||||| ||||||| |||||||| | ||||||| ||| |  ||||||| ||| |||||||||||||| |||    
T  18333776 tgtttataagtgggg-ggtaatcgtcacctcacaagccggttttgtggggttgtgttaggcccaaccacgaattctaagatggtatcagagcctcttcaa 18333678  T
Q  173 gatc 176  Q
    ||||    
T  18333677 gatc 18333674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 41667069 - 41666967
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct-ctcca 171  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | ||||| ||| |||||||||||| |||||    
T  41667069 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctcca 41666972  T
Q  172 agatc 176  Q
    |||||    
T  41666971 agatc 41666967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 15480330 - 15480431
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| | ||||| |||||||| | ||||||| ||| |  | ||||| ||| |||||||||||||| |||    
T  15480330 tgtttataagtgggg--gcaatcctcacctcacaagctggttttgtggggttctgttaggcccaaccacgatttctaagatggtatcagagcctcttcaa 15480427  T
Q  173 gatc 176  Q
    ||||    
T  15480428 gatc 15480431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2063809 - 2063698
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| ||||||  |||||| |||||||| | ||||||| ||| |  | ||||| ||| |||||||||||||| |||    
T  2063809 tgtttataagtgggg--gcaatcctcac-tcacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaa 2063713  T
Q  173 gatctattagatcac 187  Q
    |||| ||| ||||||    
T  2063712 gatccattggatcac 2063698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 8081190 - 8081098
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct 166  Q
    ||||||||||||||| |||||||||||  |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||    
T  8081190 tgtttataagtgggg-ggcaatcctcatctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcct 8081098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 7134005 - 7133965
Alignment:
Q  156 tatcagagcctctccaagatctattagatcacctactatca 196  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  7134005 tatcagagcctctccaagatctaccagatcacctgctatca 7133965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 30369842 - 30369964
Alignment:
Q  73 atgtttataagtggggaggcaatcctcacatcacaa-accggtttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctcca 171  Q
    |||||||||||| |||  ||||||||||| |||||| |  | ||||||||||| | ||||||| ||| |  | ||||| |||||||||||||||||||||    
T  30369842 atgtttataagtaggg--gcaatcctcacctcacaagatagttttgtggggttgtgttaggcccaaccacgatttctaagattgtatcagagcctctcca 30369939  T
Q  172 agatctattagatcacctactatca 196  Q
    ||||| ||| | |||||| ||||||    
T  30369940 agatccattgggtcacctgctatca 30369964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 4113082 - 4112981
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||| ||||||||||||    
T  4113082 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcggagcctctccaa 4112985  T
Q  173 gatc 176  Q
    ||||    
T  4112984 gatc 4112981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 25145782 - 25145691
Alignment:
Q  90 ggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaagatctatt 180  Q
    |||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | ||||| |||  |||||||||||||||||||||||||    
T  25145782 ggcaatcctcacctcacaagccggatttgtggggttgtgttaggcccaaccatgatttctaagatgatatcagagcctctccaagatctatt 25145691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 39348428 - 39348337
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctc 167  Q
    |||||||||||||||  ||||||||||| ||||||||||| ||||||||||| | ||||||| ||| |  | ||||| ||| |||||||||||||    
T  39348428 tgtttataagtgggg--gcaatcctcacctcacaaaccggttttgtggggttgtgttaggcccaac-acgatttctaagatggtatcagagcctc 39348337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 27413436 - 27413469
Alignment:
Q  156 tatcagagcctctccaagatctattagatcacct 189  Q
    |||||||||||||||||||||||||||| |||||    
T  27413436 tatcagagcctctccaagatctattagaccacct 27413469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 35892301 - 35892402
Alignment:
Q  76 tttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaaga 174  Q
    |||||||||||||  ||||| ||||| |||||| ||||||| |||||||| | ||||||  ||| | || ||||| ||| ||||||||| || |||||||    
T  35892301 tttataagtgggg--gcaatactcacctcacaacccggttttgtggggttctgttaggctcaaccataatttctaagatggtatcagagtctatccaaga 35892398  T
Q  175 tcta 178  Q
    ||||    
T  35892399 tcta 35892402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 1924 - 2025
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  1924 tgtttataagtgggg--gcaatcctcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaa 2021  T
Q  173 gatc 176  Q
    ||||    
T  2022 gatc 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 54567900 - 54568001
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  | ||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  54567900 tgtttataagtgggg--gaaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaa 54567997  T
Q  173 gatc 176  Q
    ||||    
T  54567998 gatc 54568001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 45828026 - 45828128
Alignment:
Q  73 atgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctcca 171  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||| ||| |||| | |||||||  || | || ||||| ||| |||||||||||||||||    
T  45828026 atgtttataagttggg--gcaatcctcacctcacaagccggttttgtgaggttgtgttaggccctaccacaatttctaagatggtatcagagcctctcca 45828123  T
Q  172 agatc 176  Q
    |||||    
T  45828124 agatc 45828128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 1723152 - 1723059
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctct 168  Q
    |||||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||    
T  1723152 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 1723059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 4155332 - 4155432
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| ||| || ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||| ||||||||    
T  4155332 tgtttataagtgggg--gcaatcctcacctcaaaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagtctctccaa 4155429  T
Q  173 gat 175  Q
    |||    
T  4155430 gat 4155432  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 50052616 - 50052556
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    ||||||||||||||| |||||||||||| |||||| |||| ||||||||||| | |||||||    
T  50052616 tgtttataagtgggg-ggcaatcctcacttcacaagccggttttgtggggttgtgttaggcc 50052556  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 11589793 - 11589886
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctct 168  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||| | ||||||| ||| |  | |||||  || ||||||||||||||    
T  11589793 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 11589886  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 22729108 - 22729209
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||| ||||||||  ||||||||||| |||||| |||| |||||| |||| | ||||||| ||| | || ||||| ||| |||||||| ||| |||||    
T  22729108 tgtttacaagtgggg--gcaatcctcacttcacaagccggttttgtgaggttgtgttaggcccaaccacaatttctaagatggtatcagatcctatccaa 22729205  T
Q  173 gatc 176  Q
    ||||    
T  22729206 gatc 22729209  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 35038504 - 35038403
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| | |||| | ||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||| ||||||||||    
T  35038504 tgtttataagtgggg--gcaatcctcacctgacaagctggttttgtggggttgtgttaggcccaaccacgacttctaagatggtatcagtgcctctccaa 35038407  T
Q  173 gatc 176  Q
    ||||    
T  35038406 gatc 35038403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 54368524 - 54368625
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggtttg-tggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| |||||||  ||||||| | |||| || ||| |  | ||||| ||| |||||||||||||| |||    
T  54368524 tgtttataagtgggg--gcaatcctcacctcacaagccggttttatggggttgtgttagacccaaccacgatttctaagatggtatcagagcctcttcaa 54368621  T
Q  173 gatc 176  Q
    ||||    
T  54368622 gatc 54368625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 6218282 - 6218333
Alignment:
Q  145 ttctatgattgtatcagagcctctccaagatctattagatcacctactatca 196  Q
    ||||| ||| |||||||||||||||||||||| ||| |||||||||||||||    
T  6218282 ttctaagatggtatcagagcctctccaagatccattggatcacctactatca 6218333  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 11036822 - 11036703
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggtt-tgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| |||||| ||| || ||||||||| | ||||||||||| | || || || ||| ||||||||||| ||| ||    
T  11036822 tgtttataagtgggg--gcaatcctcacctcacaagccgattgtgtggggttgtgttaggcctaaccacaatttttaagatggtatcagagccactctaa 11036725  T
Q  173 gatctattagatcacctactat 194  Q
    |||| ||| |  ||||||||||    
T  11036724 gatccattgggccacctactat 11036703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 22231382 - 22231287
Alignment:
Q  76 tttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||  ||||||||||| |||||| ||||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  22231382 tttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaa 22231287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 7926336 - 7926437
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||| |||||||| ||||| ||||||| |||||| | | ||||||| ||| || | ||| | ||| ||||||||||||||||||    
T  7926336 tgtttataagtgggg--gcattcctcacaacacaagccggttttgtggggctgtgttaggcccaaccaagatttcgaagatggtatcagagcctctccaa 7926433  T
Q  173 gatc 176  Q
    ||||    
T  7926434 gatc 7926437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 21041359 - 21041460
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    ||||||||||||||||   ||||||||| |||||||||||||| | |  ||||| ||||||  ||| | |||||||| ||| |||| |||||||||||||    
T  21041359 tgtttataagtggggaa--aatcctcacctcacaaaccggttttgcgaagttatgttaggcacaaccacaaattctaagatagtattagagcctctccaa 21041456  T
Q  173 gatc 176  Q
    ||||    
T  21041457 gatc 21041460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 1518172 - 1518263
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct 166  Q
    |||||||||||||||  ||||||||||  |||||| ||||||| |||||||| | ||||||||||| |  | ||||| ||| ||||||||||||    
T  1518172 tgtttataagtgggg--gcaatcctcagctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagatggtatcagagcct 1518263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 21498362 - 21498421
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcc 134  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||||||||||||| |||||||    
T  21498362 tgtttataagtgggg--gcaatcctcacctcacaagccggttttgtggggttatgttaggcc 21498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 35788667 - 35788769
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccgg-tttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcct-ctcca 171  Q
    |||||||||||||||  ||||||||||| |||||| |||| ||| ||||||| | ||||||| ||| |  | ||||| ||| |||||||||||| |||||    
T  35788667 tgtttataagtgggg--gcaatcctcacctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctcca 35788764  T
Q  172 agatc 176  Q
    |||||    
T  35788765 agatc 35788769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 35797054 - 35796960
Alignment:
Q  73 atgtttataagtggggaggcaatcctcacatcacaaacc-ggtttgtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctct 168  Q
    ||||||||||||||||  ||||||||||| ||||||||| | ||||||||||| | ||| ||| ||| |  | ||||| ||| ||||||||||||||    
T  35797054 atgtttataagtgggg--gcaatcctcacctcacaaaccagttttgtggggttgtgttaagcccaactaccatttctaagatggtatcagagcctct 35796960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 40717517 - 40717420
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||| ||| ||  |||||| |||||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  40717517 tgtttataagtgggg--gcaatcctcacctcaaaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaa 40717420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 50543639 - 50543542
Alignment:
Q  78 tataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaagatc 176  Q
    |||||||||||  ||||||||||| |||||| ||||||| |||| ||| | ||||||| ||| |  | ||||| |||  |||||||||||||||||||||    
T  50543639 tataagtgggg--gcaatcctcacctcacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagatgatatcagagcctctccaagatc 50543542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 5830 - 5729
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    |||||||||||||||  ||||||||||  |||||| ||||||| | |||||| | ||||||| ||| |  | ||||| ||| ||||||||||||||||||    
T  5830 tgtttataagtgggg--gcaatcctcatctcacaagccggttttgcggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaa 5733  T
Q  173 gatc 176  Q
    ||||    
T  5732 gatc 5729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 14311 - 14412
Alignment:
Q  74 tgtttataagtggggaggcaatcctcacatcacaaaccggttt-gtggggttattttaggcctaacgaaaaattctatgattgtatcagagcctctccaa 172  Q
    ||||||||||||||||  ||||| |||| |||||| ||||||| |||||||| | ||||||| ||| |    ||||| ||| ||||||||||||||||||    
T  14311 tgtttataagtgggga--caatcatcacctcacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagatggtatcagagcctctccaa 14408  T
Q  173 gatc 176  Q
    ||||    
T  14409 gatc 14412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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