View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_24 (Length: 268)
Name: NF9249_low_24
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9715163 - 9714900
Alignment:
| Q |
1 |
aatcctgaatccaaaccttcctttgcctcagcagtaaaattggaaaagacactggatttagcttcacaatcaaaacatgtttttatattgtaatcactta |
100 |
Q |
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| T |
9715163 |
aatcttgaatccaaaccttcctttgcctcagcagcaaaattggaaaagatgctagatttagcttcacaatcaaaacatgtttttatattgtaatcactta |
9715064 |
T |
|
| Q |
101 |
tactcgcatatgattgttctcctagatacttctctcgaggaggaggaagatcacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaa |
200 |
Q |
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| T |
9715063 |
ttcccgcatatgattgttctcctagatacttctctcgaggaggaggaagattacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaa |
9714964 |
T |
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| Q |
201 |
ttcatttctatccgtagttttccaccatggttgagcaccatcatcttcaatccaagaataatct |
264 |
Q |
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| T |
9714963 |
ttcatttctatccgtagttttccaccatggttgagcaccgtcatcttcaatccaagaataatct |
9714900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 48877359 - 48877425
Alignment:
| Q |
139 |
ggaggaggaagatcacaattctcaacataattgagtgatttctgcaaaaccaagaaagctaattcat |
205 |
Q |
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| T |
48877359 |
ggaggaggaagatcacaattctcaatatggttgagtgatttgtgtgaaacaaaggaagctaactcat |
48877425 |
T |
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