View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9249_low_25 (Length: 266)

Name: NF9249_low_25
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9249_low_25
NF9249_low_25
[»] chr8 (5 HSPs)
chr8 (18-259)||(19189429-19189671)
chr8 (27-236)||(15938452-15938665)
chr8 (50-236)||(33180179-33180364)
chr8 (48-150)||(32017709-32017811)
chr8 (48-110)||(35416621-35416683)
[»] scaffold0003 (1 HSPs)
scaffold0003 (61-236)||(303421-303590)
[»] scaffold0028 (1 HSPs)
scaffold0028 (107-236)||(33455-33584)
[»] chr4 (1 HSPs)
chr4 (48-149)||(9045830-9045931)
[»] chr5 (3 HSPs)
chr5 (48-150)||(19576915-19577017)
chr5 (61-150)||(22578667-22578756)
chr5 (48-103)||(30062494-30062549)
[»] chr7 (6 HSPs)
chr7 (48-147)||(16649332-16649432)
chr7 (48-147)||(17623693-17623793)
chr7 (48-150)||(29501867-29501967)
chr7 (48-150)||(25174465-25174569)
chr7 (80-150)||(6428836-6428907)
chr7 (176-236)||(4248527-4248587)
[»] scaffold0008 (1 HSPs)
scaffold0008 (60-150)||(36143-36232)
[»] chr6 (2 HSPs)
chr6 (58-160)||(7524191-7524292)
chr6 (61-146)||(13405100-13405185)
[»] chr2 (3 HSPs)
chr2 (70-150)||(17525790-17525870)
chr2 (60-116)||(41273768-41273824)
chr2 (48-150)||(31643344-31643446)
[»] chr1 (1 HSPs)
chr1 (60-161)||(42225631-42225731)
[»] chr3 (1 HSPs)
chr3 (48-100)||(34661067-34661119)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 19189429 - 19189671
Alignment:
Q  18 gggggaatgctcacctcacatttggac-atatcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaata 116  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |    
T  19189429 ggggaaatgctcacctcacatttggaccatatcaaacctcccgtatattgtcatgtcaactgaaaattcccataattaacagtagtactataaataaaca 19189528  T
Q  117 gtttcataaattatagcagttgtaaaatatgtaagtccttttttataggtacccacctgaactctttagtcaaacttcgccacttgtactttatgtttaa 216  Q
    |||||||||||||||| ||| |||||| |||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  19189529 gtttcataaattatagtagtcgtaaaaaatgtaagtccttttctttaggtacccacctgaactttttagtcaaactccgccacttgtactttatgtttaa 19189628  T
Q  217 tgcttattacaactttaattgtgtttataccttgtagaataat 259  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  19189629 tgcttattacaactttaattgtgtttatacattatagattaat 19189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 15938452 - 15938665
Alignment:
Q  27 ctcacctcacatttggac-atatcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaata---gtttca 122  Q
    ||||||| |||||||||| |||| ||||||||| | ||||||| |||||| |||||| || | ||||||||||| ||||| |||| |||||   |||| |    
T  15938452 ctcaccttacatttggaccatataaaacctcccttgtattgtcctgtcaactgaaaactcccctaattaacagtcgtactgtaaaaaaataacagtttga 15938551  T
Q  123 taaattatagcagttgtaaaatatgtaagtccttttttataggtacccacctgaactctttagtcaaacttcgccacttgtactttatgtttaatgctta 222  Q
     |  ||||||||||  ||||||||||| ||| |||||| ||||||||||||| |||| ||||||||||   || |||||||||||| || ||||||||||    
T  15938552 cactttatagcagtaataaaatatgtacgtcattttttgtaggtacccacctaaactttttagtcaaatcccgtcacttgtactttgtgcttaatgctta 15938651  T
Q  223 ttacaactttaatt 236  Q
    ||||||||||||||    
T  15938652 ttacaactttaatt 15938665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 236
Target Start/End: Complemental strand, 33180364 - 33180179
Alignment:
Q  50 aaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgta 149  Q
    ||||||||  |||||| ||||||||| |||||||||    ||||||  || |||||||| | |||||||||||||| ||||| |||| ||||||||||||    
T  33180364 aaacctcctttatattatcatgtcaactgaaaattccttcaattaattgt-gtactatacaaaaatagtttcataatttataacagtggtaaaatatgta 33180266  T
Q  150 agtccttttttataggtacccacctgaactctttagtcaaacttcgccacttgtactttatgtttaatgcttattacaactttaatt 236  Q
    | || ||||||  | |||||||||  |||| ||| ||||||||  | |||||  ||||  || || |||||||||||||||||||||    
T  33180265 attcatttttttcaagtacccacccaaactttttcgtcaaactctgtcacttcaacttcgtgcttgatgcttattacaactttaatt 33180179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 32017811 - 32017709
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatg 147  Q
    ||||| |||||| |||||||| |||||||||||||||||| || |||||||||||||| || | ||| |||| ||||  |||||  |||| |||||||||    
T  32017811 tcaaatctcccgcatattgtcttgtcaattgaaaattctcttagttaacagttgtactgtacaaaaaaagttacatattttataatagttataaaatatg 32017712  T
Q  148 taa 150  Q
    |||    
T  32017711 taa 32017709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 35416621 - 35416683
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaa 110  Q
    ||||||||||| |||||||||||||| | | |||||||    |||||||||||||||||||||    
T  35416621 tcaaacctcccttatattgtcatgtcgagttaaaattcctccaattaacagttgtactataaa 35416683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 303590 - 303421
Alignment:
Q  61 atattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaagtcctttttt 160  Q
    |||||||| |||||| |||||||||||  |||||||||||||||| || | ||| || ||||||| |||||| |||||||||||||||||      || |    
T  303590 atattgtcttgtcaactgaaaattctctcaattaacagttgtactgtacaaaaaaagattcataatttatagtagttgtaaaatatgtaa------ttat 303497  T
Q  161 ataggtacccacctgaactctttagtcaaacttcgccacttgtactttatgtttaatgcttattacaactttaatt 236  Q
     || ||| |||||  |||| |||||||||||| |  || ||  ||||| |||||||| ||||||||||||||||||    
T  303496 ttaagtatccaccctaactttttagtcaaactccatcatttcaactttgtgtttaatacttattacaactttaatt 303421  T

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Target: scaffold0028 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 33584 - 33455
Alignment:
Q  107 taaataaatagtttcataaattatagcagttgtaaaatatgtaagtccttttttataggtacccacctgaactctttagtcaaacttcgccacttgtact 206  Q
    |||| ||| |||||||||| |||||||||| ||||||||||||| || |||||   | ||| || || || || |||||||||||| || |||||  |||    
T  33584 taaaaaaacagtttcataatttatagcagtagtaaaatatgtaaatcatttttataaagtatccgcccgagctttttagtcaaactccgacacttcaact 33485  T
Q  207 ttatgtttaatgcttattacaactttaatt 236  Q
    || || ||||||||||||||||||||||||    
T  33484 ttgtgcttaatgcttattacaactttaatt 33455  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 9045931 - 9045830
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatg 147  Q
    ||||| |||| | |||||||| |||||| |||||||||||  | || ||||||||||| || | ||| |||||||||| |||||| ||||||||||||||    
T  9045931 tcaaatctcctgcatattgtcctgtcaactgaaaattctctcagttgacagttgtactctacaaaaaaagtttcataatttatagtagttgtaaaatatg 9045832  T
Q  148 ta 149  Q
    ||    
T  9045831 ta 9045830  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 19577017 - 19576915
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactata-aataaatagtttcataaattatagcagttgtaaaatat 146  Q
    ||||| |||||| |||||||| |||||| ||||||||||| || |||||||||||| | || || ||| |||||||||| |||||| |||||| ||||||    
T  19577017 tcaaatctcccgcatattgtcctgtcaactgaaaattctc-tagttaacagttgtaatgtacaaaaaaaagtttcataatttatagtagttgttaaatat 19576919  T
Q  147 gtaa 150  Q
    ||||    
T  19576918 gtaa 19576915  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 22578756 - 22578667
Alignment:
Q  61 atattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaa 150  Q
    |||||||| |||||| |||||||||||    |||||| || |||| || | ||| |||||||||| |||||| |||||||||||||||||    
T  22578756 atattgtcctgtcaactgaaaattctctcgtttaacaattatactgtacaaaaaaagtttcataatttatagtagttgtaaaatatgtaa 22578667  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 30062549 - 30062494
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgta 103  Q
    ||||| |||||||||||||||||||||| ||||||||||   |||||||| |||||    
T  30062549 tcaaatctcccgtatattgtcatgtcaactgaaaattctttcaattaacaattgta 30062494  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 16649432 - 16649332
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactata-aataaatagtttcataaattatagcagttgtaaaatat 146  Q
    ||||| ||||||||||||||| || ||| |||||||||||    |||||||||||| | || || |||||||||||||| |||||| |||||| ||||||    
T  16649432 tcaaatctcccgtatattgtcctgccaactgaaaattctctgggttaacagttgtaatgtacaaaaaatagtttcataatttatagtagttgttaaatat 16649333  T
Q  147 g 147  Q
    |    
T  16649332 g 16649332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 17623793 - 17623693
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactata-aataaatagtttcataaattatagcagttgtaaaatat 146  Q
    ||||| ||||||||||||||| || ||| |||||||||||    |||||||||||| | || || |||||||||||||| |||||| |||||| ||||||    
T  17623793 tcaaatctcccgtatattgtcctgccaactgaaaattctctgggttaacagttgtaatgtacaaaaaatagtttcataatttatagtagttgttaaatat 17623694  T
Q  147 g 147  Q
    |    
T  17623693 g 17623693  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 29501967 - 29501867
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatg 147  Q
    ||||| |||||||| |||||| |||||| |||||||||||    |||||||||||| | || | ||| |||||||||| |||||| |||||| |||||||    
T  29501967 tcaaatctcccgtacattgtcctgtcaactgaaaattctctg--ttaacagttgtaatgtacaaaaaaagtttcataatttatagtagttgttaaatatg 29501870  T
Q  148 taa 150  Q
    |||    
T  29501869 taa 29501867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 25174465 - 25174569
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactata-aataa-atagtttcataaattatagcagttgtaaaata 145  Q
    ||||| |||||| |||||||| |||||| |||||||||||  | |||| ||||||| | || ||||| | ||||| |||| |||||| ||||||||||||    
T  25174465 tcaaatctcccgcatattgtcctgtcaactgaaaattctctaagttaatagttgtattgtacaataacaaagttttataatttatagtagttgtaaaata 25174564  T
Q  146 tgtaa 150  Q
    |||||    
T  25174565 tgtaa 25174569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 6428907 - 6428836
Alignment:
Q  80 aaattctcgtaattaacagttgtactataaataaat-agtttcataaattatagcagttgtaaaatatgtaa 150  Q
    |||||| | ||||||| |||||||||||||| |||  |||||| ||| |||||||| |||||||||||||||    
T  6428907 aaattcccctaattaatagttgtactataaaaaaaacagtttcgtaatttatagcatttgtaaaatatgtaa 6428836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 4248587 - 4248527
Alignment:
Q  176 aactctttagtcaaacttcgccacttgtactttatgtttaatgcttattacaactttaatt 236  Q
    |||| ||||||||||||||| || ||  ||||  |||||||||||||||| ||||||||||    
T  4248587 aactttttagtcaaacttcgtcatttcaacttcgtgtttaatgcttattataactttaatt 4248527  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 36143 - 36232
Alignment:
Q  60 tatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaa 150  Q
    ||||||||| ||||||||||||||||||  |||||| ||||||| |||||| ||| || ||||||| ||||| || | ||||| |||||||    
T  36143 tatattgtcttgtcaattgaaaattctcccaattaagagttgtattataaa-aaaaagattcataatttatatcattagtaaactatgtaa 36232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 7524191 - 7524292
Alignment:
Q  58 cgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaagtccttt 157  Q
    ||||||||||| | |||| | ||||||| | || |||||| |||||| ||||| ||| |||||||||| |||||| || |||||||||||||| || |||    
T  7524191 cgtatattgtcttatcaactaaaaattcccttagttaacatttgtaccataaaaaaa-agtttcataatttatagtagatgtaaaatatgtaattcattt 7524289  T
Q  158 ttt 160  Q
    |||    
T  7524290 ttt 7524292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 13405185 - 13405100
Alignment:
Q  61 atattgtcatgtcaattgaaaattctcgtaattaacagttgtactata--aataaatagtttcataaattatagcagttgtaaaatat 146  Q
    |||||||| |||||| |||||||||||  |  ||||||||||| ||||  || ||| |||||||||| |||||| |||||||||||||    
T  13405185 atattgtcctgtcaactgaaaattctcaga--taacagttgtattatacaaaaaaaaagtttcataatttatagtagttgtaaaatat 13405100  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 17525870 - 17525790
Alignment:
Q  70 tgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaa 150  Q
    |||||| |||||||||||  | |||||||||||| | ||   ||| |||||||||| |||||| |||||||||||||||||    
T  17525870 tgtcaactgaaaattctcacagttaacagttgtattgtaccaaaaaagtttcataatttatagtagttgtaaaatatgtaa 17525790  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 41273768 - 41273824
Alignment:
Q  60 tatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaata 116  Q
    ||||||||| | |||||||||||||||| |||| |||  ||||||||||||||||||    
T  41273768 tatattgtcctatcaattgaaaattctcttaataaactattgtactataaataaata 41273824  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 31643446 - 31643344
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatg 147  Q
    ||||| ||||||||||||||  |||||  |||||||||||    |||||||||||| | || | ||| |||||||||| |||||  |||||| |||||||    
T  31643446 tcaaatctcccgtatattgttctgtcatatgaaaattctctcggttaacagttgtaatgtacaaaaaaagtttcataatttataatagttgttaaatatg 31643347  T
Q  148 taa 150  Q
    |||    
T  31643346 taa 31643344  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 42225631 - 42225731
Alignment:
Q  60 tatattgtcatgtcaattgaaaattctcgtaattaacagttgtactataaataaatagtttcataaattatagcagttgtaaaatatgtaagtccttttt 159  Q
    ||||| ||| |||||| |||||||| ||  |||||||| | ||||| |||| ||  | |||||||| |||||||| ||||||||||||||| || |||||    
T  42225631 tatatggtcctgtcaactgaaaattttctcaattaacaatggtactctaaa-aagcaatttcataatttatagcaattgtaaaatatgtaattcattttt 42225729  T
Q  160 ta 161  Q
    ||    
T  42225730 ta 42225731  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 34661067 - 34661119
Alignment:
Q  48 tcaaacctcccgtatattgtcatgtcaattgaaaattctcgtaattaacagtt 100  Q
    ||||| |||||| ||||||||||||||| |||||||||||  | |||||||||    
T  34661067 tcaaatctcccgcatattgtcatgtcaactgaaaattctctcagttaacagtt 34661119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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