View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_27 (Length: 227)
Name: NF9249_low_27
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36350308 - 36350082
Alignment:
| Q |
1 |
tatgccttcttaagcaagccatttctacgcttgcagaacgtaacttggcgattcgttgtgttctcaatcctcttgatctcaatcttccctcttccaatct |
100 |
Q |
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| T |
36350308 |
tatgccttcttaagcaagccatttctacgcttgcagaacgtaacttgacgattcgttgtgttctcaatcctcttgatctcaatcttccctcttccaatct |
36350209 |
T |
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| Q |
101 |
ttgctctctgtggagaatctggcatggattcgtttggaaaactcatagtttcaacctgcatcaaaataaaacatcatcaacacatttctactatnnnnnn |
200 |
Q |
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| T |
36350208 |
ttgctctctgtggagaatctggcatggattcgtttggaaaactcatagtttcaacctgcatcaaaataaaacatcatcaacacatttctcctataaaaaa |
36350109 |
T |
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| Q |
201 |
nngagtctatatcttagcaaaattgat |
227 |
Q |
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||||||||| |||||||||||||| |
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| T |
36350108 |
aatagtctatatattagcaaaattgat |
36350082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5546408 - 5546271
Alignment:
| Q |
1 |
tatgccttcttaagcaagccatttctacgcttgcagaacgtaacttggcgattcgttgtgttctcaatcctcttgatctcaatcttccctcttccaatct |
100 |
Q |
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| T |
5546408 |
tatgctttcttcaacaaaccatttcttcttttgcagaaagttacttgacgattcgtcgtgttttcaatccttttgatctcaatctttccccttccaatct |
5546309 |
T |
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| Q |
101 |
ttgctctctgtggagaatctggcatggattcgtttggaaaa |
141 |
Q |
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| T |
5546308 |
t---tctctgtggagaatctgacatggattcatttggaaaa |
5546271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 40328598 - 40328561
Alignment:
| Q |
64 |
tcaatcctcttgatctcaatcttccctcttccaatctt |
101 |
Q |
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| T |
40328598 |
tcaatcctcttgatctcaatcttacctcttcccatctt |
40328561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 10225531 - 10225563
Alignment:
| Q |
60 |
gttctcaatcctcttgatctcaatcttccctct |
92 |
Q |
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| T |
10225531 |
gttctcaatcctcttgatctcaatcttacctct |
10225563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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