View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_3 (Length: 924)
Name: NF9249_low_3
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 835; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 17 - 911
Target Start/End: Complemental strand, 29282226 - 29281332
Alignment:
| Q |
17 |
agattttggagttattgaatcacgatcagacaattccgatttcaacccaatttaaaagcatgaatgtctggaaatagtaaccgcacacaatctaaattcg |
116 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
29282226 |
agattttggagttattgaatcacgattagacaattccgatttcgacccaatttaaaagcatgaatgtgtggaaatagtaatcgcagacaatctaaattcg |
29282127 |
T |
|
| Q |
117 |
tatatgcatgaagaattaaatatttatttaaagtaaaaaactaatccaaattgaacttaagaacacaaattgatttatgaggagtcatatatacaagggt |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282126 |
tatatgcatgaagaattaaatatttatttaaagtaaaaaactaatccaaattgaacttaagaacacaaattgatttatgaggagtcatatatacaagggt |
29282027 |
T |
|
| Q |
217 |
attattcatgtataatgagacaccttgaataaaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttctttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29282026 |
attattcatgtataatgagacaccttgaataaaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttccttt |
29281927 |
T |
|
| Q |
317 |
tcaattgaatttgtgaaagtgtttaaagttgtttaatgtttaatcagtgtttgttgccaaaattagattatgacaaccttttccctccccttactatttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281926 |
tcaattgaatttgtgaaagtgtttaaagttgtttaatgcttaatcagtgtttgttgccaaaattagattatgacaaccttttccctccccttactatttc |
29281827 |
T |
|
| Q |
417 |
tcttactttttgaggtacaatctcatgcagagaacatggaccatggggcccacataacacaatcaccaacctatttattcagaagaataccacaataaga |
516 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
29281826 |
tcttactttttgagggacaatctcatgcagagaacatggaccatggggcccacattacacaatcaccaacctatttgttcagaagaatgccacaataaga |
29281727 |
T |
|
| Q |
517 |
gggtccaccatcaattaatgctgacttggcaatatgatgatacaaaacatgaaaagatggacatgcccaaattcaggattgatggttcatccttttattg |
616 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29281726 |
gggtctaccatcaattaatgctgacttggcaatatgatgatacagaacatgaaaagatggacatgcccaaattcaggattgatggttcatccttttattg |
29281627 |
T |
|
| Q |
617 |
gatccctttgtaatattttattactaatttccttttcttttttcatggaagttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaat |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281626 |
gatccctttgtaatattttattactaatttccttttcttttttcatggaagttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaat |
29281527 |
T |
|
| Q |
717 |
catttagaaagtaactgtctatttcttccccttttatctctacatgtccttttctcaataagaagtaaaattattataacaatcatattgaaatcaagaa |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
29281526 |
catttagaaagtaactgtctatttcttccccttttatctctacatgtccttttctcaataagaagtaaaattattacaacaattatattgaaatcaagaa |
29281427 |
T |
|
| Q |
817 |
gaaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgtctctg |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281426 |
gaaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgtctctg |
29281332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 458 - 589
Target Start/End: Original strand, 6470481 - 6470612
Alignment:
| Q |
458 |
catggggcccacataacacaatcaccaacctatttattcagaagaataccacaataagagggtccaccatcaattaatgctgacttggcaatatgatgat |
557 |
Q |
| |
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|||||||| |||| ||||||||||||| | |||| ||| |||||| |||| ||||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
6470481 |
catggggcatacattacacaatcaccaaacaatttgctcaaaagaatgccacgataagagggatcatcatcaattcatgctgacttggcaatatgatgat |
6470580 |
T |
|
| Q |
558 |
acaaaacatgaaaagatggacatgcccaaatt |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
6470581 |
gcaaaacatgaaaagatggacatgcccaaatt |
6470612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 818 - 906
Target Start/End: Original strand, 6471307 - 6471395
Alignment:
| Q |
818 |
aaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgt |
906 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
6471307 |
aaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttctactgt |
6471395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 3508382 - 3508299
Alignment:
| Q |
248 |
aaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttctttttcaattgaatttgtg |
331 |
Q |
| |
|
||||||||||| | ||| |||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
3508382 |
aaaagaaagtgcaaaaataaaatttgttagatgaatggaatgcatgattcataaaactatgtttctttttcaattgtatttgtg |
3508299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 3508529 - 3508482
Alignment:
| Q |
268 |
aatttgttaggtgaatgacatggatgattcataaaaatatgtttcttt |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
3508529 |
aatttgataggtgaatgacatggatgattcaaaacactatgtttcttt |
3508482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 828 - 900
Target Start/End: Original strand, 42525454 - 42525526
Alignment:
| Q |
828 |
tacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttc |
900 |
Q |
| |
|
||||| |||||| ||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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|
| T |
42525454 |
tacctttcattttgagtatcttccccttgagctgctcagcacaagcctcacagtgcatgttcacgttaagttc |
42525526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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