View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9249_low_7 (Length: 725)
Name: NF9249_low_7
Description: NF9249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9249_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 396 - 714
Target Start/End: Complemental strand, 31261513 - 31261194
Alignment:
| Q |
396 |
gtattgttctttttcttatttcaataaatttaattataaaactcattcataataagtgtttgagaagatagacattgtgacaca--tccacaagttcgat |
493 |
Q |
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| T |
31261513 |
gtattgttcttttttttatttcaataaatttaatgataaaactcattcacaataagtgtt-gagaagatagacattgtgacacacatccacaagttcgat |
31261415 |
T |
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| Q |
494 |
gatcctacatgattgtaatttaatgatgatttgtgaatcaaaacgaattcagctcaatcaaactcaacatatttcacctcaaaatcttaaatttagcata |
593 |
Q |
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| T |
31261414 |
gatcctacatgattgtaatttaatgatgatttgtgaatcacaacgaattcagctcaatcgaactcaacatatttcacttcaaaatcttaaatttagcata |
31261315 |
T |
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| Q |
594 |
tacaaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactcttcacatcttcgatcacaaattcatttgagcatggtttgatct |
693 |
Q |
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| T |
31261314 |
tacaaaaacgaaatgtatgatgaattatgaaaatacactttccttaattttaaactctttacatcttcgatcacaaattcatttgagcatggttcgatct |
31261215 |
T |
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| Q |
694 |
gcttttaactactctctgctt |
714 |
Q |
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| T |
31261214 |
gcctttaactactctttgctt |
31261194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 31261891 - 31261593
Alignment:
| Q |
18 |
tgttgttttgtgttgggtttgagtggttgaagtgttatgcattgtggtttgatagtgaaggttgtggttttggggaaagaaatgtgggatgtagtgtggt |
117 |
Q |
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| T |
31261891 |
tgttgttttgtgttgggtttgagtggttgaagtgttatgcattgtggtttgatagtgaaggttgtggttttggggaaagaaatgtgggatgtagtgtggt |
31261792 |
T |
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| Q |
118 |
ttaaggatgtcattgtgattggtgagtgagaaagagtgttgagaatggaaatgaatgagggaagtttgctactttgctatannnnnnnnnnnnnnnnnnn |
217 |
Q |
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| T |
31261791 |
ttaaggatgtcattgtgattggtgagtgagaaagagtgttgagaatggaaatgaatgagggaagtttgctactttgctatatgtgtgtacgttgttgttt |
31261692 |
T |
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| Q |
218 |
nnnttacgagggaaatttatgagtgagtgatgaagattttataggggnnnnnnnncagagagagaaagagtgcacttgttgtgattgagtgatgtgatg |
316 |
Q |
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| T |
31261691 |
gttttacgagggaaatttatgagtgagtgatgaagattttataggggaaaaaaaacagagagagaaagagggcacttgttgtgattgagtgatgtgatg |
31261593 |
T |
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