View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9250_low_1 (Length: 1118)
Name: NF9250_low_1
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 535 - 1090
Target Start/End: Original strand, 44692796 - 44693352
Alignment:
| Q |
535 |
gcggtggaatcttcgtaggaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtg |
634 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44692796 |
gcggtggaatcttcgtagaaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaatatctaatcacctttttgtg |
44692895 |
T |
|
| Q |
635 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttgga |
734 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44692896 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggctctgttgga |
44692995 |
T |
|
| Q |
735 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
834 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692996 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
44693095 |
T |
|
| Q |
835 |
tgacaaggtgaaggaagtgttggaaatcattga-gaggttaaagttttatcgtggaggtggtgcctatcccgccttaatataccggcctgcctttattat |
933 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
44693096 |
tgacaaggtgaaggaagtgttggaaatcgttgaggaggttaaagttttatcgtggaggtggtgcctatccagccttaagataccggcctgcctttattat |
44693195 |
T |
|
| Q |
934 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
1033 |
Q |
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| T |
44693196 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
44693295 |
T |
|
| Q |
1034 |
ctggttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgct |
1090 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693296 |
ctagttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgct |
44693352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 23 - 541
Target Start/End: Original strand, 44692240 - 44692758
Alignment:
| Q |
23 |
ggcgggtgatttggtggataatgagaatgattgttgaccttcaaactcctctaggtggtggaaggatattgtcaatctagagggttgtggtgggccgagt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692240 |
ggcgggtgatttggtggataatgagaatgattgttgtccttcaaactcctctaggtggtggaaggatattgtcaatctagagggttgtggtgggccgagt |
44692339 |
T |
|
| Q |
123 |
tggttcaatgaagaggtggctaggaaggtgaggaacggggttaatactaagttttggtatgcgagatggaggggtggagttccctttcgaggtaaatatc |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692340 |
tggttcaatgaagaggtggctaggaaggtgaggaacggggttaatactaagttttggtatgcgagatggaggggtggagttccctttcgaggtaaatatt |
44692439 |
T |
|
| Q |
223 |
ctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagtggcgnnnnnnngtgtgggagga |
322 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44692440 |
ctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagtggcgtttttttgtgtgggagga |
44692539 |
T |
|
| Q |
323 |
acaattgttaaataatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692540 |
acaattgttaaataatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttaca |
44692639 |
T |
|
| Q |
423 |
gttaaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccg |
522 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692640 |
gttaaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccg |
44692739 |
T |
|
| Q |
523 |
gctccgtcaaaagcggtgg |
541 |
Q |
| |
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||||||||||||| ||||| |
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| T |
44692740 |
gctccgtcaaaagtggtgg |
44692758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 560 - 859
Target Start/End: Complemental strand, 34866371 - 34866072
Alignment:
| Q |
560 |
gccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtgcattgtccggtggctagagggattt |
659 |
Q |
| |
|
||||| || |||||||| ||||| || |||| || ||||||| || | ||||| ||| | |||||| || | ||||||| ||||||||||||||||| |
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| T |
34866371 |
gcccttcctccggaggtctcggtgaggtgtgctttatgcgaggttgagacggaaacatccattcacctcttcgcgcattgtatggtggctagagggattt |
34866272 |
T |
|
| Q |
660 |
ggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttggaatgcgggagcctctaataagaagat |
759 |
Q |
| |
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|||| || || || ||||||||||||| ||||||| | ||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
34866271 |
ggttagaactccttaagtgggttgataatatgtttttgatgcctcaaaatgtttttaatcattggttgtgttggaatgcgggtgcctctaataagaaatt |
34866172 |
T |
|
| Q |
760 |
gattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtgaaggaagtgttggaa |
859 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||||| |||||||| ||| ||||||||||| ||||| ||||||| ||| || ||| ||||| |
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| T |
34866171 |
gattaagggttttagactcatttggcatgccgcaatttgggttatttggaagatgaggaatgataagatttttaacgacaaggagaaagaggtgatggaa |
34866072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 335 - 541
Target Start/End: Complemental strand, 34866639 - 34866434
Alignment:
| Q |
335 |
taatttattggaggatttggaggggcatgtgtggactcatggtgaagacgtttgggtttggaagcttgaagatgatgggaattttacggttaaatctatg |
434 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || | ||||||||| ||||| |||| | | ||||| || ||||| || ||||| ||||||||| |
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| T |
34866639 |
taatttattggaagatttggaggggcatgtgtggtctaacggtgaagacagatgggtgtggaggatggaagacgaagggaaattcacggtgaaatctatg |
34866540 |
T |
|
| Q |
435 |
tatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggctccgtcaaaa |
534 |
Q |
| |
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|||| | ||| ||||||| || |||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||| || |||||| |
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| T |
34866539 |
tatgcg-aagtttgaagggagatggattgtggagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaa |
34866441 |
T |
|
| Q |
535 |
gcggtgg |
541 |
Q |
| |
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| ||||| |
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|
| T |
34866440 |
gtggtgg |
34866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 34866777 - 34866690
Alignment:
| Q |
215 |
taaatatcctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatatgggggtgaataatgggccggtggtggagtgg |
302 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||| |||| ||| | || |||||||||| || ||| ||||||||||| |
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| T |
34866777 |
taaatatcctagattattctctatgtcgaaccaaaaagaggcattggttgcggagattggggtgaataccggtccgatggtggagtgg |
34866690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 12830039 - 12830121
Alignment:
| Q |
189 |
tggaggggtggagttccctttcgaggtaaatatcctagattgttctctatgtcaaaccaaaaagaggctatggtggcgaatat |
271 |
Q |
| |
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||||||||||| ||| |||| || | ||||||||| ||||| ||| | |||| ||||||||||||||| ||||||||| |||| |
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| T |
12830039 |
tggaggggtggtgttgccttccgtgataaatatccaagattattcgcaatgttaaaccaaaaagaggcaatggtggcggatat |
12830121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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