View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9250_low_15 (Length: 215)
Name: NF9250_low_15
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 5334622 - 5334799
Alignment:
| Q |
20 |
agctgtttgtctaaatcaatcgcaaatccagatttggaaattcgcaaacacaaatcaaagtggtttcctaggtcgtgcagagttctacaatgcacttaaa |
119 |
Q |
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| T |
5334622 |
agctgtttgtctaaatcaatcgcaaatccagatttggaaattcgcaaacacaaatcaaagtggtttcctaggtcgtgcagagttctacaatgcacttaaa |
5334721 |
T |
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| Q |
120 |
cttgtcacagtcgcacagagcaagcgcgaactcactcctgaattagtcaagaatgcattctatggtccagccgcatct |
197 |
Q |
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| T |
5334722 |
cttgtcacagtcgcacagagcaagcgcgaactcactcctgaattagtcaagaatgcattctatggtccagccgcatct |
5334799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 43470521 - 43470673
Alignment:
| Q |
44 |
aatccagatttggaaattcgcaaacacaaatcaaagtggtttcctaggtcgtgcagagttctacaatgcacttaaacttgtcacagtcgcacagagcaag |
143 |
Q |
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||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43470521 |
aatccagatttgggaatttgcaaacacaaatcagagtggtttcctaggtcgtgcagagttctacaatgcacttaaacttgttaccgtcgcacagagcaag |
43470620 |
T |
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| Q |
144 |
cgcgaactcactcctgaattagtcaagaatgcattctatggtccagccgcatc |
196 |
Q |
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| T |
43470621 |
cgtgaactcactcctgaaatggttaaagctgcattgtatggtccagctgcatc |
43470673 |
T |
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