View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9250_low_3 (Length: 527)
Name: NF9250_low_3
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 144 - 525
Target Start/End: Complemental strand, 4853270 - 4852889
Alignment:
| Q |
144 |
aaaacttttccaattttggtttactttttatagtgcaaagagcttttatttcatagaacatgaataggctcatcataaaaaggccaaaatcagcattcat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853270 |
aaaacttttccaattttggtttactttttatagtgcaaagagcttttatttcatagaacatgaataggctcatcataaaaaggccaaaatcagcattcat |
4853171 |
T |
|
| Q |
244 |
atgtacgagaaacgtaaaagacagtgtcaaaacttcaataaccataatgcaaaaagggacatatatcaagtactggaccatacaaagattatcatatcgg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853170 |
atgtacgagaaacgtaaaagacagtgtcaaaacttcaataaccataatgcaaaaagggacatatatcaagtactggaccatacaaagattatcatatcgg |
4853071 |
T |
|
| Q |
344 |
tgtttcttttcagtgtttcgcactcctttattctttgcatgaatatatacacatttagtaggattttctttttccttgattcatactgcaagtgtttatt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4853070 |
tgtttcttttcagtgtttcgcactcctttattctttgcatgaatatatacacatttagtaggattttctttttccttgattcattctgcaagtgtttatt |
4852971 |
T |
|
| Q |
444 |
tttgtcgtaaatgaaagctttctgtgtttgatacaattaagcttaatatataattatgtttgatatggaaagtggttctctg |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4852970 |
tttgtcgtaaatgaaagctttctgtgtttgatacaattaagcttaatatataattatgtttgatatggaaagtggttctctg |
4852889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 4853364 - 4853260
Alignment:
| Q |
18 |
aatacaatatcatcaaaaacttacgacttatgatctaggtttaaatttttatttttgtttgaaaatcacgaatttcaacatacaacctcatatgaaaact |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4853364 |
aatacaatatcatcaaaaacttgcgacttatgatctaggtttaattttttttttttttttgaaaatcacgaatttcaacatacaacctcatatgaaaact |
4853265 |
T |
|
| Q |
118 |
tttcc |
122 |
Q |
| |
|
||||| |
|
|
| T |
4853264 |
tttcc |
4853260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University