View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9250_low_4 (Length: 522)
Name: NF9250_low_4
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 50369522 - 50370013
Alignment:
| Q |
16 |
caacttgctggtggttgaggagctggtgagggattttatgtttccggcagttttcgacgacggaatggacgactgggtcgttgaatgggcccatgtcaag |
115 |
Q |
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| T |
50369522 |
caacttgctggtggttgaggagctggtgagggattttatgtttccggcagttttcgacgacggaatggacgactgggtcgttgaatgggcccatgtcaag |
50369621 |
T |
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| Q |
116 |
gtgctgggctttgaaataaacgttgtagcccacttgggcctgggcttctttccaaagtttgtatgattccatcaccatagggtagtaatggttttgaata |
215 |
Q |
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| T |
50369622 |
gtgctgggctttgaaataaacgttgtagcccacttgggcctgggcttctttccaaagtttgtatgattccatcaccatagggtagtaatggttttgaata |
50369721 |
T |
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| Q |
216 |
taggtagcacgaattgtgcgggattcaccgtgggaagagccacggtggtggagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctg |
315 |
Q |
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| T |
50369722 |
taggtagcacgaattgtgcgggattcaccgtgggaagagccacggtggtggagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctg |
50369821 |
T |
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| Q |
316 |
cttggtaggcggtggaacttcccatgacgccggctccgacaataatcacgtcaaactgagaatcctccatggataggatcaagtttttaaaaagggaaaa |
415 |
Q |
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| T |
50369822 |
cttggtaggcggtggaacttcccatgacgccggctccgacaataatcacgtcaaactgagaatcctccatggataggatcaagtttttaacaagggaaaa |
50369921 |
T |
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| Q |
416 |
ggattgagggagttgagtgttggtgatgctgatgcagtgtgtgttggcatttgtttaattgtatgtcaatatatagaaagggtggaatctct |
507 |
Q |
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| T |
50369922 |
ggattgagggagttgagtgttggtgatgctgatgcagtgtgtgttggcatttgtttaattgtatgtcaatatatagaaagggtggaatctct |
50370013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 50379897 - 50380033
Alignment:
| Q |
225 |
cgaattgtgcgggattcaccgtgggaagagccacggtggtggagaaagtcaaattgttcaagcaagagtgttttgagaccccttttggctgcttggtagg |
324 |
Q |
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|||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| || | || |||||||| || | |||||| || | ||||| |
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| T |
50379897 |
cgaattgtgcgggattcaccgtgggaggaaccacggtggtgaagaaaatcgaattgttcgagaaccagggttttgaggcctcgtttggcagcgtagtagg |
50379996 |
T |
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| Q |
325 |
cggtggaacttcccatgacgccggctccgacaataat |
361 |
Q |
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| T |
50379997 |
cggtggagcttcccatgacgccggcgccgacaataat |
50380033 |
T |
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