View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9250_low_5 (Length: 500)
Name: NF9250_low_5
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 41045505 - 41045986
Alignment:
| Q |
1 |
tcaaactacatcaggaacccaaaacaaatatacatatcaattagaatttccaccctcagtcactggtttatcagacaataattatccattgatttggaaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045505 |
tcaaactacatcaggaaaccaaaacaaatatacatatcaattagaatttccaccctcagtcactggtttatcagacaataattatccattgatttggaaa |
41045604 |
T |
|
| Q |
101 |
ctgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaatcccaaggcattcattggcctgtaccatcc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045605 |
ctgaacttcgttcaaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaatcccaaggcattcattggcctgtaccatcc |
41045704 |
T |
|
| Q |
201 |
aatgaaatcccttcaattagctccttagccatctccatgacaggatttgaacatcctctatcactgattcagcagcaacacttaaaaaatataatgatct |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41045705 |
aattaaatcccttcaattagctccttagccatctccatgacaggatttgaacatcctctatcactgattcagcagcaacacttaaaaaatataatgatct |
41045804 |
T |
|
| Q |
301 |
cttgtgttccacagcctccacatgcatgcaaattcaaccacctttgctttgtcaattaactctattcctccacccaaaagacccgggaactgagtgaaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41045805 |
cttgtgttccacagcctccacatgcatgcaaattcaaccacctttgctttgtcaattaactctattcctccacccaatagacccgggaactgagtgaaac |
41045904 |
T |
|
| Q |
401 |
tttcccatcccttgtcatgaaatgcagtggatacatatacccacccacttcaaaataccattccatacttccaacacttaaac |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41045905 |
tttcccatcccttgtcatgaaatgcagtggatacatatacccacccacttcaaaataccattccatactt-caacacttaaac |
41045986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 101 - 483
Target Start/End: Complemental strand, 21241810 - 21241429
Alignment:
| Q |
101 |
ctgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgcactgttaaatcccaaggcattcattggcctgtaccatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21241810 |
ctgaacttcgttctaactacaacacgcctccaaaagtccacccaacaccccaaagacctgctctgttaaatcccaaggcattcattggcctgtaccatcc |
21241711 |
T |
|
| Q |
201 |
aatgaaatcccttcaattagctccttagccatctccatgacaggatttgaacatcctctatcactgattcagcagcaacacttaaaaaatataatgatct |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21241710 |
aattaaatcccttcaattagctccttagccatctccatgacaggatttgaacatcctctatcactgattcagcagcaacacttaaaaaatataatgatct |
21241611 |
T |
|
| Q |
301 |
cttgtgttccacagcctccacatgcatgcaaattcaaccacctttgctttgtcaattaactctattcctccacccaaaagacccgggaactgagtgaaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21241610 |
cttgtgttccacagcctccacatgcatgcaaattcaaccacctttgctttgtcaattaactctattcctccacccaatagacccgggaactgagtgaaac |
21241511 |
T |
|
| Q |
401 |
tttcccatcccttgtcatgaaatgcagtggatacatatacccacccacttcaaaataccattccatacttccaacacttaaac |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
21241510 |
tttcccatcccttgtcatgaaatgcagtggatacatatacccacccacttcaaaatactattccatactt-caacacttaaac |
21241429 |
T |
|
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