View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9250_low_6 (Length: 485)

Name: NF9250_low_6
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9250_low_6
NF9250_low_6
[»] chr8 (1 HSPs)
chr8 (21-467)||(8636523-8636964)
[»] chr7 (1 HSPs)
chr7 (310-448)||(48617482-48617620)
[»] chr6 (2 HSPs)
chr6 (187-225)||(3114967-3115005)
chr6 (112-218)||(7145580-7145682)
[»] chr4 (5 HSPs)
chr4 (114-209)||(7424202-7424293)
chr4 (92-151)||(9078278-9078337)
chr4 (112-152)||(21496420-21496460)
chr4 (109-149)||(44139288-44139328)
chr4 (109-161)||(54069267-54069319)
[»] chr3 (1 HSPs)
chr3 (23-135)||(21873581-21873693)
[»] chr5 (1 HSPs)
chr5 (25-75)||(32702696-32702746)


Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 21 - 467
Target Start/End: Complemental strand, 8636964 - 8636523
Alignment:
Q  21 cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8636964 cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattagca 8636865  T
Q  121 ttttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttaccc 220  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  8636864 ttttgcaatttcaaggatcactttggattactattaatgtatgagattatgttgataca----gttctacaatttcagggaccaaattgattatttatcc 8636769  T
Q  221 caaaaattaaaccaaacagacaattcatcaaacatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac 320  Q
     ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636768 -aaaaattaaaccaaacagacaattcatcaaacatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac 8636670  T
Q  321 ccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtg 420  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636669 ccaccaccaaagttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtg 8636570  T
Q  421 agtctaatactccaaacccaagtcaacaaaatcacaatcttagacct 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8636569 agtctaatactccaaacccaagtcaacaaaatcacaatcttagacct 8636523  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 448
Target Start/End: Original strand, 48617482 - 48617620
Alignment:
Q  310 aaaaatgaaacccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt 409  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |||||||||||||| || || ||||| ||||    
T  48617482 aaaaaggaagcccaccaccaatgttttccatattgttgaatcatatcagtgaaacgccaatcttcccttgcaccccattgccacttctctcgtctgaagt 48617581  T
Q  410 aattatgagtgagtctaatactccaaacccaagtcaaca 448  Q
    | || ||  |||||||||||||||| |||||||||||||    
T  48617582 agttgtggatgagtctaatactccacacccaagtcaaca 48617620  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
Q  187 ctacaatttcagggaccaaattgattatttaccccaaaa 225  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3115005 ctacaatttcagggaccaaattgagtatttaccccaaaa 3114967  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 7145580 - 7145682
Alignment:
Q  112 tgattaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgat 211  Q
    ||||||| ||||| |||||  | |||||| |||||||||||  |||| || ||||||| ||||| |||    || ||||||||| ||||||||||||||     
T  7145580 tgattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacaca----gtcctacaattttagggaccaaattgag 7145675  T
Q  212 tatttac 218  Q
    |||||||    
T  7145676 tatttac 7145682  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 7424293 - 7424202
Alignment:
Q  114 attaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattg 209  Q
    |||||||||||||||||||| |||||| |||| |||||| |||||||  |||| || ||||    ||||||| ||||||||| ||||| |||||||    
T  7424293 attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttg----atacagtcctacaattttagggatcaaattg 7424202  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 9078337 - 9078278
Alignment:
Q  92 taccaacaaaggaacggatttgattaacattttgcaatttcaaggatcactttggaatat 151  Q
    |||||| | ||| ||| |||||||||| ||||||||||||| ||||||| ||||||||||    
T  9078337 taccaatagagggacgaatttgattaaaattttgcaatttcgaggatcattttggaatat 9078278  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 21496460 - 21496420
Alignment:
Q  112 tgattaacattttgcaatttcaaggatcactttggaatatt 152  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  21496460 tgattaacattttgcaatttcagggatcattttgaaatatt 21496420  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 44139328 - 44139288
Alignment:
Q  109 atttgattaacattttgcaatttcaaggatcactttggaat 149  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  44139328 atttgattaacattttgcaatttcaagtatcattgtggaat 44139288  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 54069319 - 54069267
Alignment:
Q  109 atttgattaacattttgcaatttcaaggatcactttggaatattattaatgta 161  Q
    |||||||||| ||||||||||||||||||  | |||||||||||  |||||||    
T  54069319 atttgattaatattttgcaatttcaaggaaaattttggaatattcataatgta 54069267  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 21873581 - 21873693
Alignment:
Q  23 gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt 122  Q
    ||||||||||||||| ||||   | |||| | || |||||||| ||||||||| | |||||| ||  | |||||| | |||||||  ||||||||| |||    
T  21873581 gacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaatagaggaacgagtttgattaaaatt 21873680  T
Q  123 ttgcaatttcaag 135  Q
    |||||||||||||    
T  21873681 ttgcaatttcaag 21873693  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 32702746 - 32702696
Alignment:
Q  25 cattattcacttattttcacttgcatctccgacattaccaacttaatgtca 75  Q
    |||||||| |||| |||||  |||||||||||||||||||||||| |||||    
T  32702746 cattattctcttagtttcaaatgcatctccgacattaccaacttattgtca 32702696  T

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