View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9250_low_7 (Length: 457)
Name: NF9250_low_7
Description: NF9250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9250_low_7 |
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| [»] scaffold0008 (8 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 69913 - 70342
Alignment:
| Q |
15 |
acatcaaccatggatttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaaca |
114 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69913 |
acatcaaccatggatttcagacctattagcctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaaca |
70012 |
T |
|
| Q |
115 |
tcatatatgaagagaaaaacgcctttgtaaatggaagattgatttgtagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagt |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70013 |
tcatatatgaagagcaaaacgcctttgtaaatggaagattgatttaaagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagt |
70112 |
T |
|
| Q |
215 |
tatttcacagaaatgcatgcttcctctaaaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtg |
314 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70113 |
tatttcacagaaatgcatgtttcctctagaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtg |
70212 |
T |
|
| Q |
315 |
gggattgtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
70213 |
gggattgtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaa |
70312 |
T |
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| Q |
415 |
gtattggcatattgtaggagggtgatgtcca |
445 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
70313 |
gtattggcatattgtagga-ggtgatgtcca |
70342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 77756 - 78185
Alignment:
| Q |
15 |
acatcaaccatggatttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaaca |
114 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77756 |
acatcaaccatggatttcagacctattagcctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaacaaatccttcctaaca |
77855 |
T |
|
| Q |
115 |
tcatatatgaagagaaaaacgcctttgtaaatggaagattgatttgtagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagt |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77856 |
tcatatatgaagagcaaaacgcctttgtaaatggaagattgatttaaagatacaaagagtatgtggagaaaaggggatggttgagcatattctcacaagt |
77955 |
T |
|
| Q |
215 |
tatttcacagaaatgcatgcttcctctaaaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtg |
314 |
Q |
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|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77956 |
tatttcacagaaatgcatgtttcctctagaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaactttaatgaaaatcacaggaaggtgtgtg |
78055 |
T |
|
| Q |
315 |
gggattgtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
78056 |
gggattgtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaa |
78155 |
T |
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| Q |
415 |
gtattggcatattgtaggagggtgatgtcca |
445 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
78156 |
gtattggcatattgtagga-ggtgatgtcca |
78185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 69698 - 69821
Alignment:
| Q |
321 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattg |
420 |
Q |
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|||||| ||||||| | ||||| | |||||||| || ||||||| |||||||| | |||||| |||||||| || | |||||||||| ||||||||||| |
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| T |
69698 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
69797 |
T |
|
| Q |
421 |
gcatattgtaggagggtgatgtcca |
445 |
Q |
| |
|
|||| |||||||| ||||||||||| |
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| T |
69798 |
gcattttgtagga-ggtgatgtcca |
69821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 445
Target Start/End: Original strand, 77541 - 77664
Alignment:
| Q |
321 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccttattttaacaaaagtattg |
420 |
Q |
| |
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|||||| ||||||| | ||||| | |||||||| || ||||||| |||||||| | |||||| |||||||| || | |||||||||| ||||||||||| |
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| T |
77541 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
77640 |
T |
|
| Q |
421 |
gcatattgtaggagggtgatgtcca |
445 |
Q |
| |
|
|||| |||||||| ||||||||||| |
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| T |
77641 |
gcattttgtagga-ggtgatgtcca |
77664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 70447 - 70500
Alignment:
| Q |
28 |
atttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaa |
81 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
70447 |
atttcagacatattagtctttgtaacgtagtgatgataattgtgacaaaaacaa |
70500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 78290 - 78343
Alignment:
| Q |
28 |
atttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaa |
81 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
78290 |
atttcagacatattagtctttgtaacgtagtgatgataattgtgacaaaaacaa |
78343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 69654 - 69695
Alignment:
| Q |
244 |
accaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
285 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
69654 |
accaagtgcaattaaacatgtgtgtgaggtagtgaaagggaa |
69695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 77497 - 77538
Alignment:
| Q |
244 |
accaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
285 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
77497 |
accaagtgcaattaaacatgtgtgtgaggtagtgaaagggaa |
77538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 29943235 - 29943305
Alignment:
| Q |
30 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggttaaaaca |
100 |
Q |
| |
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|||||||| || ||||| |||||||| |||||||| |||||||| ||| | |||||||||||||| ||||| |
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| T |
29943235 |
ttcagaccaataagtctctgtaacgtggtgatgaagattgtgaccaaagctattgcaaataggttgaaaca |
29943305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8711024 - 8710960
Alignment:
| Q |
30 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggtt |
94 |
Q |
| |
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||||| || ||||| |||||||| || ||||||||||| || || ||||| |||||||||||||| |
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|
| T |
8711024 |
ttcaggccaattagcctttgtaatgtggtgatgaaaatcgtaaccaaaaccattgcaaataggtt |
8710960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 20925983 - 20925919
Alignment:
| Q |
30 |
ttcagacctattagtctttgtaacgtagtgatgaaaattgtgacaaaaacaattgcaaataggtt |
94 |
Q |
| |
|
||||| || ||||| |||||||| || ||||||||||| || || ||||| |||||||||||||| |
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|
| T |
20925983 |
ttcaggccaattagcctttgtaatgtggtgatgaaaatcgtaaccaaaaccattgcaaataggtt |
20925919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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