View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9251_low_1 (Length: 524)
Name: NF9251_low_1
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9251_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 23 - 508
Target Start/End: Complemental strand, 40345936 - 40345451
Alignment:
| Q |
23 |
tactcagaatagaagatcaccatatcaaatattgttgatgtcattataccaatttaattccccggttacaacataatatcaatcatatagcaacaaattt |
122 |
Q |
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| T |
40345936 |
tactcagaatagatgatcaccatatcaaatattgttgatgtcattataccaatttaattccccggttacaacataatatcaatcatatagcaacaaattt |
40345837 |
T |
|
| Q |
123 |
tcctagggaacaaatcgtccctatctacaaaaccacaaatttcctaattgctcattcagctgatcattttcaaatctatcaattccttgctttataattg |
222 |
Q |
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| T |
40345836 |
tcctagggaacaaatcgtccctatctacaaaaccacaaatttcctaattgctcattcagctgatcattttcaaatctatcaattccttgctttataattg |
40345737 |
T |
|
| Q |
223 |
acatatatatctacaaaaccctaaattttcaattaaatcttcttgctaatgaagtacagtcaatctaatttcctcttgttctctttgctttgatttgaag |
322 |
Q |
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| T |
40345736 |
acatatatatctacaaaaccctaaattttcaattaaatcttcttgctaatgaagtacagtcaatctaatttcctcttgttctctttgttttgatttgaag |
40345637 |
T |
|
| Q |
323 |
attttgcgaacgagcaccactcttcccagatttaggaatagatttcttactattccgaacaaccctctgcgccattgtcttgagtgaaattccaacttct |
422 |
Q |
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| T |
40345636 |
attttgcgaacgagcaccagtcttcccagatttaggaatagatttcttactattccgaacaaccctctgagccattgtcttgagtgaaattccaacttct |
40345537 |
T |
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| Q |
423 |
aaaggactgagaacttccttcaactccagccaatcaagatcttcagaatcaccgtcttcatactcaacatggtaccacccagattc |
508 |
Q |
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| T |
40345536 |
aaaggactgagaacttccttcaactccagccaatcaagatcttcagaatcaccgtcttcatactcaacatggtaccacccagattc |
40345451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 177 - 390
Target Start/End: Complemental strand, 40347667 - 40347461
Alignment:
| Q |
177 |
ttcagctgatcattttcaaatctatcaattccttgctttataattgacatatatatctacaaaaccctaaattttcaattaaatcttcttgctaatgaag |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |||| |
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| T |
40347667 |
ttcagctgatcattttcaaatctatcaattccttgctttataattgacatatctatctacaaaacactaaattttcaattaaa------aggtattgaaa |
40347574 |
T |
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| Q |
277 |
tacagtcaatctaatttcctcttgttctctttgctttgatttgaagattttgcgaacgagcaccactcttcccagatttaggaatagatttcttactatt |
376 |
Q |
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| T |
40347573 |
tacagtcaatctaatttcctttttttctcttt-ttttgatttgggaatttttcgaacaagagccattcttccaagatttatgagtagatttcttactatt |
40347475 |
T |
|
| Q |
377 |
ccgaacaaccctct |
390 |
Q |
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||||||||| |||| |
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| T |
40347474 |
ccgaacaactctct |
40347461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 40347832 - 40347745
Alignment:
| Q |
53 |
attgttgatgtcattataccaatttaattccccggttacaacataatatcaatca-tatagcaacaaattttcctagggaacaaatcgtc |
141 |
Q |
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|||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
40347832 |
attgttgatgccattataccaaattaattccccggtt--aacataatatcaatcactatatcaacaaattttcctagggaagaaatcgtc |
40347745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 509
Target Start/End: Complemental strand, 40351238 - 40351091
Alignment:
| Q |
362 |
agatttcttactattccgaacaaccctctgcgccattgtcttgagtgaaattccaacttctaaaggactgagaacttccttcaactccagccaatcaaga |
461 |
Q |
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|||||||||| | |||| || |||||| || |||| ||||||||| |||||| ||| || ||||||| |||||||||||||||||| ||||||||||| |
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| T |
40351238 |
agatttcttatttttccaaataaccctttgtgccaatgtcttgagagaaattgtaacatcgaaaggacgaagaacttccttcaactccggccaatcaaga |
40351139 |
T |
|
| Q |
462 |
tcttcagaatcaccgtcttcatactcaacatggtaccacccagattct |
509 |
Q |
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| T |
40351138 |
tcttctaagtcaccatcttcatattgaaccttgtacaatccagattct |
40351091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 40359460 - 40359352
Alignment:
| Q |
280 |
agtcaatctaatttcctcttgttctctttgctttgatttgaagattttgcgaacgagcaccactcttcccagatttaggaatagatttcttactattccg |
379 |
Q |
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|||||||| |||||| | ||||| |||||| ||| |||| ||||||| ||| ||||||| |||| || || || |||||||||||||| ||||||| |
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| T |
40359460 |
agtcaatccaatttctttttgttttctttgttttaattttgagattttttaaacaagcaccattcttttcaaatctacgaatagatttcttattattccg |
40359361 |
T |
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| Q |
380 |
aacaaccct |
388 |
Q |
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| T |
40359360 |
aataaccct |
40359352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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