View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9251_low_10 (Length: 322)

Name: NF9251_low_10
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9251_low_10
NF9251_low_10
[»] chr2 (9 HSPs)
chr2 (61-305)||(17711649-17711893)
chr2 (205-305)||(17660755-17660852)
chr2 (192-305)||(17616919-17617031)
chr2 (201-305)||(17641879-17641983)
chr2 (214-305)||(17698593-17698681)
chr2 (176-305)||(17650514-17650647)
chr2 (176-263)||(17707847-17707929)
chr2 (176-263)||(17722244-17722326)
chr2 (118-167)||(17641785-17641833)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 61 - 305
Target Start/End: Original strand, 17711649 - 17711893
Alignment:
Q  61 tcccttgtggtgcaccttccttcaaccttctcagaattttcacctacaatacattcagttcatttagatatcaacttaatttcttctacataatatacaa 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17711649 tcccttgtggtgcaccttccttcaaccttctcagaattttcacctacaacacattcagttcatttagatatcaacttaatttcttctacataatatacaa 17711748  T
Q  161 acaaacatcaaaaacaacacttagactcagataaatctgttttactcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttc 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17711749 acaaacatcaaaaacaacactcagactcagataaatctgttttactcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttc 17711848  T
Q  261 accacctatgatgttttcatcagttttagaggcatagatacccgc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17711849 accacctatgatgttttcatcagttttagaggcatagatacccgc 17711893  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 17660755 - 17660852
Alignment:
Q  205 ctcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttcaccacctatgatgttttcatcagttttagaggcatagatacccg 304  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  17660755 ctcaattcttgcatcatatcatgacacaaccttcattgtctgtctcttctagctt---cacctatgatgttttcatcagttttagaggcatagatacccg 17660851  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 17616919 - 17617031
Alignment:
Q  192 taaatctgttttactcaattcttgcatcatatc--atgacacagccttcattgtctgtctcttctagcttcaccacctatgatgttttcatcagttttag 289  Q
    |||||| |||||||||||||||||||||||||   ||||||||  ||||||||||||||||||||||||| |||   |||||||||||||||||||||||    
T  17616919 taaatcagttttactcaattcttgcatcatatataatgacacaagcttcattgtctgtctcttctagcttaacc---tatgatgttttcatcagttttag 17617015  T
Q  290 aggcatagatacccgc 305  Q
    ||| ||||||||||||    
T  17617016 aggtatagatacccgc 17617031  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 17641879 - 17641983
Alignment:
Q  201 tttactcaattcttgcatcatat---catgacacagccttcattgtctgtctcttctagcttcaccacctatgatgttttcatcagttttagaggcatag 297  Q
    |||||||||||||| ||||||||   |||||||||  |||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||    
T  17641879 tttactcaattcttacatcatattatcatgacacaagcttcattgtctgtctcttctagcttcacc---tatgatgttttcatcagttttagaggaatag 17641975  T
Q  298 atacccgc 305  Q
    ||||||||    
T  17641976 atacccgc 17641983  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 17698593 - 17698681
Alignment:
Q  214 tgcatcatatcatgacacagccttcattgtctgtctcttctagcttcaccacctatgatgttttcatcagttttagaggcatagatacccgc 305  Q
    ||||||||||||||||||| ||||| ||||||| |||||||| |||||||   |||||||||||||||||||||||||||||||||||||||    
T  17698593 tgcatcatatcatgacacaaccttctttgtctggctcttctatcttcacc---tatgatgttttcatcagttttagaggcatagatacccgc 17698681  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 17650514 - 17650647
Alignment:
Q  176 aacacttagactcagataaatctgttttactcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttcacc---------acc 266  Q
    |||||| | ||||||| ||||| ||||| |||||||||     |||||||||| |||  | |||||||||||||||||||||||||||         ||     
T  17650514 aacactcaaactcagacaaatcagttttcctcaattct-----catatcatgaaacattcatcattgtctgtctcttctagcttcacctatgaatgtact 17650608  T
Q  267 tatgatgttttcatcagttttagaggcatagatacccgc 305  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  17650609 tatgatgttttcctcagttttagaggcatagatacccgc 17650647  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 17707847 - 17707929
Alignment:
Q  176 aacacttagactcagataaatctgttttactcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttcacc 263  Q
    |||||| ||||||||| |||||  |||| |||||||||     |||||||||| ||| || |||||||||||||||| ||||||||||    
T  17707847 aacactcagactcagagaaatcaattttcctcaattct-----catatcatgaaacatccgtcattgtctgtctcttgtagcttcacc 17707929  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 17722244 - 17722326
Alignment:
Q  176 aacacttagactcagataaatctgttttactcaattcttgcatcatatcatgacacagccttcattgtctgtctcttctagcttcacc 263  Q
    |||||| ||||||||| |||||  |||| |||||||||     |||||||||| ||| || |||||||||||||||| ||||||||||    
T  17722244 aacactcagactcagagaaatcaattttcctcaattct-----catatcatgaaacatccatcattgtctgtctcttgtagcttcacc 17722326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 17641785 - 17641833
Alignment:
Q  118 gttcatttagatatcaacttaatttcttctacataatatacaaacaaaca 167  Q
    ||||||| || |||||||||||||||||||| || |||||||||||||||    
T  17641785 gttcattcagctatcaacttaatttcttctatat-atatacaaacaaaca 17641833  T

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