View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9251_low_13 (Length: 287)
Name: NF9251_low_13
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9251_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 1652348 - 1652503
Alignment:
| Q |
38 |
atagaagcaaagtgcttgattcagcagactgtaatccatcaacgtcaaaaatggctgaggatacaattcatgtggtgatgcttccgtggtcagcatttgg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1652348 |
atagaagcaaagtgcttgattcagcagacggtaatccatcaacgtcaaaaatgactgaggatacaattcatgtggtgatgcttccgtggtcagcatttgg |
1652447 |
T |
|
| Q |
138 |
ccacttaataccatttttcaaactttcaatcgccttagccaaagctggtgttcatg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1652448 |
ccacttaataccatttttcaaactttcaatcgccttagccaaagctggtgttcatg |
1652503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 1740724 - 1740879
Alignment:
| Q |
38 |
atagaagcaaagtgcttgattcagcagactgtaatccatcaacgtcaaaaatggctgaggatacaattcatgtggtgatgcttccgtggtcagcatttgg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1740724 |
atagaagcaaagtgcttgattcagcagacggtaatccatcaacgtcaaaaatgactgaggatacaattcatgtggtgatgcttccgtggtcagcatttgg |
1740823 |
T |
|
| Q |
138 |
ccacttaataccatttttcaaactttcaatcgccttagccaaagctggtgttcatg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1740824 |
ccacttaataccatttttcaaactttcaatcgccttagccaaagctggtgttcatg |
1740879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 11070566 - 11070675
Alignment:
| Q |
84 |
aaaaatggctgaggatacaattcatgtggtgatgcttccgtggtcagcatttggccacttaataccatttttcaaactttcaatcgccttagccaaagct |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11070566 |
aaaaatggctgaggatacaattcatgtggtgatgcttccatggtcagcatttggccacttaataccatttttcaaactttcaatagccttagccaaagct |
11070665 |
T |
|
| Q |
184 |
ggtgttcatg |
193 |
Q |
| |
|
|||||||||| |
|
|
| T |
11070666 |
ggtgttcatg |
11070675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 1653026 - 1653098
Alignment:
| Q |
191 |
atgctgctaaatctataatatgttgcagttgctatgagatcgaacatcgaaggtgaatatctgaacctatacaagaaact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1653026 |
atgctgctaaatctataatatgttgcagttgctatgag-------atcgaaggtgaatatctgaacctatacaagaaact |
1653098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 1741402 - 1741474
Alignment:
| Q |
191 |
atgctgctaaatctataatatgttgcagttgctatgagatcgaacatcgaaggtgaatatctgaacctatacaagaaact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1741402 |
atgctgctaaatctataatatgttgcagttgctatgag-------atcgaaggtgaatatctgaacctatacaagaaact |
1741474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 11079832 - 11079904
Alignment:
| Q |
191 |
atgctgctaaatctataatatgttgcagttgctatgagatcgaacatcgaaggtgaatatctgaacctatacaagaaact |
270 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11079832 |
atgctgctaaagctgtaatatgttgcagttgctatg-------acattgaaggtgaatatctgaatctatacaagaaact |
11079904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 28002268 - 28002189
Alignment:
| Q |
114 |
gatgcttccgtggtcagcatttggccacttaataccatttttcaaactttcaatcgccttagccaaagctggtgttcatg |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28002268 |
gatgcttccgtggtcagcatttggccacttaataccatttttcaaactttcaatcgccttagcgaaagctggtgttcatg |
28002189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 28001667 - 28001595
Alignment:
| Q |
191 |
atgctgctaaatctataatatgttgcagttgctatgagatcgaacatcgaaggtgaatatctgaacctatacaagaaact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28001667 |
atgctgctaaatctataatatgttgcagttgctatgagat-------cgaaggtgaatatctgaacctatacaagaaact |
28001595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University