View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9251_low_17 (Length: 214)
Name: NF9251_low_17
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9251_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 27816196 - 27816379
Alignment:
| Q |
17 |
tacttgaatgtttgtgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgtt |
116 |
Q |
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| T |
27816196 |
tacttgaatgtttgtgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgtt |
27816295 |
T |
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| Q |
117 |
ttctgttgtgacagttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatag |
200 |
Q |
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| T |
27816296 |
ttctgttgtgacagttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatag |
27816379 |
T |
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Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 13887702 - 13887872
Alignment:
| Q |
31 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtga-c |
128 |
Q |
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| T |
13887702 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaaccctaacaaacttc-aacatgccagctgtatttctgttatgacc |
13887800 |
T |
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| Q |
129 |
agttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatag |
200 |
Q |
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| T |
13887801 |
agttagaggagttgtgttactatttagttagtgtatgatggatataatgtactctcattagcttataaatag |
13887872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 13892359 - 13892528
Alignment:
| Q |
31 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |||||||| ||||| |
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| T |
13892359 |
tgttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaat-atgccaactgtatttctgttatgaca |
13892457 |
T |
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| Q |
130 |
gttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatag |
200 |
Q |
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|||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
13892458 |
gttagatgagttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaatag |
13892528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 15094697 - 15094864
Alignment:
| Q |
31 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||| |||| ||||||| ||||| |
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| T |
15094697 |
tgttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactt-tactatgccaactgtaattctgtt-tgaca |
15094794 |
T |
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| Q |
130 |
gttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaata |
199 |
Q |
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| T |
15094795 |
gttagagtaatagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaata |
15094864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 18291734 - 18291879
Alignment:
| Q |
31 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
129 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| | | | ||||||||| |||||||||||||| |
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| T |
18291734 |
tgttacaaaataaaga---agatgaagttacttgtgatgcaagtaacttgagcaaaccctaacaaac-tgtactaggccagctgtatttctgttgtgaca |
18291829 |
T |
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| Q |
130 |
gttagaggag-ttgtgatactatgtagttagtatatgattgatataatgt |
178 |
Q |
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||||||| || | ||| |||| ||||||||| |||||| |||||||||| |
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| T |
18291830 |
gttagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
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