View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9251_low_4 (Length: 454)
Name: NF9251_low_4
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9251_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 39023001 - 39022577
Alignment:
| Q |
1 |
gagtttttcactgctcaaacttgatgacaaaagactcgcacttggaccgatgtaaaattcttgattcaaggagagttattttcacgggttgccatatatg |
100 |
Q |
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| T |
39023001 |
gagttgttcactgctcaaacttgatgacaaaagactcgcacttggaccgatgtaaaattcttgattcaaggatagttattttcacgggttgccatatatg |
39022902 |
T |
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| Q |
101 |
gatgcaagtcaatttattgattagaaatgcataaatttgtttgctgccgacaagtactactaataaatttctttctatgtatgtattcattaaactaagt |
200 |
Q |
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| T |
39022901 |
gatgcaagtcaatttattgattagaaatgcataaatttgtttgctgccgacaagtactactaataaatttctttctatgtatgtattcattaaactaagt |
39022802 |
T |
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| Q |
201 |
tactagtaataaatatcaaacaaaattaataccaaatcaatgaacatacaaaatattttctccattcaaaataactcatagtttttcattccaatacaa- |
299 |
Q |
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| T |
39022801 |
tactagtaataaatatcaaacaaaattaataccaaatcaatgaacatacaaaatattttctccattcaaaataactcatagtttttcattccaatacaat |
39022702 |
T |
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| Q |
300 |
--nnnnnnnnnnnnaatttatatgaaattatttaatcgatttatgatttgagacggatgattagggtaataataagaattttaaaacnnnnnnnaaggaa |
397 |
Q |
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| T |
39022701 |
tttttattttttttaatttatatgaaattatttaatcgatttatgatttgagacggatgattagggtaataataataattgtaaaactttttttaaggaa |
39022602 |
T |
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| Q |
398 |
taataattctaaaacttagtaataa |
422 |
Q |
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| T |
39022601 |
taataattctaaaacttagtaataa |
39022577 |
T |
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