View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9251_low_6 (Length: 435)

Name: NF9251_low_6
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9251_low_6
NF9251_low_6
[»] chr2 (4 HSPs)
chr2 (17-419)||(32635573-32635972)
chr2 (147-419)||(32616893-32617165)
chr2 (1-69)||(45340586-45340653)
chr2 (100-146)||(7732226-7732272)
[»] chr6 (1 HSPs)
chr6 (1-82)||(6346837-6346918)
[»] chr7 (2 HSPs)
chr7 (1-65)||(24731734-24731798)
chr7 (1-65)||(7711336-7711400)
[»] chr3 (1 HSPs)
chr3 (1-65)||(36084541-36084605)
[»] chr5 (3 HSPs)
chr5 (103-146)||(11573578-11573621)
chr5 (9-82)||(15160427-15160500)
chr5 (1-65)||(30655155-30655219)
[»] chr4 (1 HSPs)
chr4 (1-82)||(2549300-2549381)
[»] scaffold0554 (1 HSPs)
scaffold0554 (17-61)||(7350-7394)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 32635972 - 32635573
Alignment:
Q  17 ctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaaacannnnnnnnnnatacttactaacatttttcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||          ||||||| |||||||||||||    
T  32635972 ctaaaaccatttagcaacataggttttacctaacacttatcaaatattactaaatttaaatagtaa-cattgttttt--atacttagtaacatttttcaa 32635876  T
Q  117 atattactaaatgtcatatatgttgtagtggactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgcnnnnnnngtggctagct 216  Q
    |||||| |||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||||| |       ||||||||||    
T  32635875 atattattaaatgtcatatatgttgcagttgactgagagaggaacacgactaacctcatacatcgtgtgagaagtgttactactttttttgtggctagct 32635776  T
Q  217 tctttgattgctgaggttgcttctctaaaatttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaattttt 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32635775 tctttgatagctgaggttgcttctctaaaatttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcggagaattttt 32635676  T
Q  317 gaacacttgctattagaggctctgcaagaagtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttggtttg 416  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  32635675 gaacacttgctattagaggctccgcaagaattgacaacatagtaattcccaacaccacatatgctatagcttctaaccatgcagtcacccctttggtttg 32635576  T

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Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 147 - 419
Target Start/End: Complemental strand, 32617165 - 32616893
Alignment:
Q  147 gactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgcnnnnnnngtggctagcttctttgattgctgaggttgcttctctaaaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  32617165 gactgacagaggaacatgactaacctcatacatagtgtgagaagtattactgctttttttgtggctagcttctttgattgctgaggttgcttctctaaaa 32617066  T
Q  247 tttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaatttttgaacacttgctattagaggctctgcaagaa 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32617065 tttgtagccaaagggactaaaatgaaagagatgaaaaatgatgaaattcctgcagcttcagagaatttttgaacacttgctattagaggctccgcaagaa 32616966  T
Q  347 gtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttggtttgatt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32616965 gtgacaacatagcaattcccaacatcacgtatgctatagcttctaaccatgcagtcacccctttggtttgatt 32616893  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 45340653 - 45340586
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaa 69  Q
    ||||| ||||||||| |||||||||||||| | |||||||||| ||||||| || ||||||||||||||    
T  45340653 atactatcaagtgttactaaaaccatttagaagcataggttttgcctaaca-ttttcaaatgttattaa 45340586  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 7732272 - 7732226
Alignment:
Q  100 ttactaacatttttcaaatattactaaatgtcatatatgttgtagtg 146  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  7732272 ttactaacatttttcaagtgttactaaatctcatatatgttgtagtg 7732226  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6346837 - 6346918
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 82  Q
    |||| |||||||||| || ||| ||||||| |||||||| ||||||||||| |||||||||||||  || ||||||||||||    
T  6346837 ataccctcaagtgttacttaaatcatttagtaacataggctttacctaacatttatcaaatgttacaaaatttaaatagtaa 6346918  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24731734 - 24731798
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 65  Q
    |||||| |||||||| || ||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  24731734 atactcacaagtgttactgaaatcatttagtaacatgggttttacctaacatttatcaaatgtta 24731798  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7711336 - 7711400
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 65  Q
    ||||||||||||||| || ||| ||||||| ||||  || ||||||||||| | |||||||||||    
T  7711336 atactctcaagtgttactgaaatcatttagtaacacgggctttacctaacattcatcaaatgtta 7711400  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36084605 - 36084541
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 65  Q
    ||||||| ||||||| || ||| ||||||| |||||||| ||||||||||| || ||||||||||    
T  36084605 atactctaaagtgttactgaaatcatttagtaacataggctttacctaacatttgtcaaatgtta 36084541  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 11573621 - 11573578
Alignment:
Q  103 ctaacatttttcaaatattactaaatgtcatatatgttgtagtg 146  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  11573621 ctaacatttatcaaataatactaaatttcatatatgttgtagtg 11573578  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 15160500 - 15160427
Alignment:
Q  9 aagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 82  Q
    ||||||| || ||| ||||||| ||||| || ||||||||||| |||||||||||||  |  ||||||||||||    
T  15160500 aagtgttactgaaatcatttagtaacatgggctttacctaacatttatcaaatgttacaagatttaaatagtaa 15160427  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30655155 - 30655219
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgtta 65  Q
    ||||| ||||||||| || ||| ||||||| ||||  || ||||||||||| |||||||||||||    
T  30655155 atactttcaagtgttactgaaatcatttagtaacaccggctttacctaacatttatcaaatgtta 30655219  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2549381 - 2549300
Alignment:
Q  1 atactctcaagtgtttctaaaaccatttagcaacataggttttacctaacacttatcaaatgttattaattttaaatagtaa 82  Q
    ||||||||||||||| || ||| ||||||| ||||  |||||||||||||| || |||||| |||  |  ||||||||||||    
T  2549381 atactctcaagtgttactgaaatcatttagtaacacgggttttacctaacatttgtcaaatattacaagatttaaatagtaa 2549300  T

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Target: scaffold0554 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7394 - 7350
Alignment:
Q  17 ctaaaaccatttagcaacataggttttacctaacacttatcaaat 61  Q
    |||||||||||||| ||||| || ||||||||||| |||||||||    
T  7394 ctaaaaccatttagtaacattggctttacctaacatttatcaaat 7350  T

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