View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9251_low_9 (Length: 327)
Name: NF9251_low_9
Description: NF9251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9251_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 61 - 312
Target Start/End: Original strand, 40402648 - 40402904
Alignment:
| Q |
61 |
aacatagattttaactatagtaatgattttaactcttttgtttccggtgagaaaaaactacaataatctaagtttggttgggatataaattaagagttct |
160 |
Q |
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| T |
40402648 |
aacacagattttaactatagtaatgattttaactcttttgtttccagtgagaaaaaactacaataatctaagtttggttgggatataaattaagagttct |
40402747 |
T |
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| Q |
161 |
tatatttgaacacccttaaatttctaacactcatttaatccataattttctttttatctctttctcatatcacatcatc-----aataaattatttgggt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40402748 |
tatatttgaacacccttaaatttctaacactcatttaatacataattttctttttatctctttctcatatcacatcatcaataaaataaattatttgggt |
40402847 |
T |
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| Q |
256 |
atatacgtaacgtgaacnnnnnnncaaagttatttgggtacgtatatcgatgatttt |
312 |
Q |
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| T |
40402848 |
atatacgtaacgtgaacaaaaaaacaaagttatttgggtacgtatatcgatgatttt |
40402904 |
T |
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