View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9252_low_2 (Length: 424)
Name: NF9252_low_2
Description: NF9252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9252_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 47468805 - 47468410
Alignment:
| Q |
20 |
acaaacaccacccttattcagttattcactaattctagtctaaaaacaatttcttaattatctttttggtcttttaacctccttatttttgaagttcaag |
119 |
Q |
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| T |
47468805 |
acaaacaccacccttattcagttattcactaattctagtctaaaaacaatttcttaattatctttttggtgttttaacctccttatttttgaagttcaag |
47468706 |
T |
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| Q |
120 |
ttggttcttaactttaaaaagggtcttctccaacnnnnnnnnnnnnnnnnnnnnngggtcaatttggttctttaactttaaaaaactcatgatggtcctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47468705 |
ttggttcttaactttaaaaagggtcttctccaacaaaacaaaaaaactttaaaaagggtcaatttggttctttaactttaaaaaactcatgatggtcttt |
47468606 |
T |
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| Q |
220 |
ccttttaatcaaaacgttaaacagttaaacacacttaccataatttaaagctagacnnnnnnnaactaataaagttgaacgatactgatctttggattac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47468605 |
ccttttaatcaaaacgttaaacagttaaacacacttaccataatttaaagctagactttttt-aactaataaagttgaacgatactgatctttggattac |
47468507 |
T |
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| Q |
320 |
ttgttcatgcaatggaaccaatccaaatagctcctgccaaatgaatgtcaagaccctatcttccaatgccacaacaaaaaggaattctataacacca |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47468506 |
ttgttcatgcaatggaaccaatccaaatagctcttgccaaatgaatgtcaagaccctatcttccaatgccacaacaaaaaggaattctataacacca |
47468410 |
T |
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