View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9252_low_3 (Length: 418)
Name: NF9252_low_3
Description: NF9252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9252_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 27430464 - 27430852
Alignment:
| Q |
18 |
atttgtagaataaaatatggttgaacatactaatttattgcataataattacaacagtacatataaatgtagnnnnnnncatacaaataagaaaattctt |
117 |
Q |
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| T |
27430464 |
atttgtagaataaaatatggttgaacatactaatttattgcataataattacaacagtacatataaatgtagaaaaaaacatacaaataagagaattctt |
27430563 |
T |
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| Q |
118 |
aactgaatcagaaacat--taagtgtagttattttccctcnnnnnnnntaagtgtagttatttccaatgaaattttcttcaatatttgtaaaacatgaca |
215 |
Q |
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| T |
27430564 |
aactgaatcagaaacattataagtgtagttattttccctcaaaaaaaataagtgtagttatttccaatgaaattttcttcaatatttgtaaaacatgaca |
27430663 |
T |
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| Q |
216 |
ctatgttctctcnnnnnnnncaacattcaaattttatcgcatcaagttggattgacnnnnnnnaaagcatattttttgaaagtgaacaaaccctttctct |
315 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
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| T |
27430664 |
ctatgttctctc-tcaaaaacaacattcaaattttatcgcatcaagttggattgactttttttaaagcatattttttgaaattgaacaaacactttctct |
27430762 |
T |
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| Q |
316 |
tgttaaaatgatgaaaatttgtataattgtcgttaatatttgtaacaaca----tttttta----ttttatttcaaagtttgcatccatt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
27430763 |
tgttaaaatgatgaaaatttgtataattgtcgttaatatttgtaacaacaatttttttttaatttttttatttcaaagtttgcatccatt |
27430852 |
T |
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