View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9252_low_4 (Length: 360)
Name: NF9252_low_4
Description: NF9252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9252_low_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 53693271 - 53693629
Alignment:
| Q |
1 |
atagctaattgaaatatactagtgtaatccagcctaccattcagcccaaacatatcttctgcttaaagggatttgataaataggtaggatagtcgtcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53693271 |
atagctaattgaaatatactagtgtaatccagcctaccattcagcccaaacatatcttctgcttaaagggatttgataaataggtaggatagtcgtcatc |
53693370 |
T |
|
| Q |
101 |
ctcaactattcctagtttcctacgaaaatgaatatagtgaaattggaagaaaatatgaggtagccaataaattacgctttgtattgtctacagattttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
53693371 |
ctcaactattcctagtttcctacgaaaatgaatatagtgaaattggaagaaaatatgaagtagccaataaatgatgctttgtattgtctacagattttaa |
53693470 |
T |
|
| Q |
201 |
actaagtgnnnnnnnnnnnnngacagattttaaactacgttcttccctgtcacatagttatagtgataatgatcttccgtttgttttgagttaaacctta |
300 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53693471 |
actaagt-tttttttttttttgacagattttaaactatgttcttccctgtcacatagttatagtgataatgatcttccgtttgttttgagttaaacctta |
53693569 |
T |
|
| Q |
301 |
caccactgattataactcatatgtctaggtatggtattgaatacttattgcagttgatgc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53693570 |
caccactgattataactcatatgtctaggtatggtattgaatacttattgcagttgatgc |
53693629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University