View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9252_low_5 (Length: 341)
Name: NF9252_low_5
Description: NF9252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9252_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 147 - 317
Target Start/End: Complemental strand, 31809574 - 31809411
Alignment:
| Q |
147 |
acatgtaaattgttgagtttgtagtccaaattggatgacagatacgtcaaaaaatgttcctgagtcgttctttcacttctacagttctactatagtatag |
246 |
Q |
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| T |
31809574 |
acatgtaaattgttgagtttgtagtccaaattggatgacagctacgtcaaaaaatgttcctgagtcgttctttcacttctacagttctactatagtatag |
31809475 |
T |
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| Q |
247 |
tcnnnnnnngggtgctattatatatgtatatagtatgtagtctcactcttttgtttgaaatcatcatctta |
317 |
Q |
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| T |
31809474 |
tctttttttgggtgctattatatatgtata-------gagtctcactcttttgtttgaaatcatcatctta |
31809411 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 31809681 - 31809614
Alignment:
| Q |
40 |
ttaaaaatgaatctacaaatggcaaaagtaatataaatagttcatttatgaattgctaatgacgtgtc |
107 |
Q |
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| T |
31809681 |
ttaaaaatgaatctacaaattgcaaaagtaatataaatatttcatttatgaattactaatgacttgtc |
31809614 |
T |
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