View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9252_low_6 (Length: 256)
Name: NF9252_low_6
Description: NF9252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9252_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 19218384 - 19218625
Alignment:
| Q |
1 |
gattgtcctaccaaattttccgaacaacagatgagtcctcacaaagaaaaagcagttccgtaggctttccgaggaaccaagtcctcagaacacacagaag |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19218384 |
gattgtcctaccaaattttccgaacgacagatgagtcctcacaaagaaaaagcagttccgtaggctttccgaggaaccaagtcctcagaacacacagaag |
19218483 |
T |
|
| Q |
101 |
ccaggtatagataacgaggggacatatcagtatcttccgaggaactgagtcctcgaaacgctgaggaatatgaatgttccaatgagatcgttggcaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19218484 |
ccaggtatagataacgaggggacatatcagtatcttccgtggaactgagtcctcgaaacgctgaggaatatgaatgttccaatgagatcgttggcaggaa |
19218583 |
T |
|
| Q |
201 |
cattgggcacgcatttggagagcacttttcgaggttactgtt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19218584 |
cattgggcacgcatttggagagcacttttcgaggttactgtt |
19218625 |
T |
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