View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9253_low_1 (Length: 824)

Name: NF9253_low_1
Description: NF9253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9253_low_1
NF9253_low_1
[»] chr4 (33 HSPs)
chr4 (6-810)||(4851457-4852280)
chr4 (104-472)||(2895087-2895455)
chr4 (99-469)||(5599025-5599398)
chr4 (104-472)||(5908268-5908639)
chr4 (94-301)||(5579040-5579246)
chr4 (139-464)||(6735721-6736049)
chr4 (128-301)||(1505284-1505456)
chr4 (556-713)||(4851387-4851544)
chr4 (128-301)||(13701902-13702074)
chr4 (128-301)||(13712395-13712567)
chr4 (473-630)||(4848321-4848464)
chr4 (392-469)||(13701736-13701813)
chr4 (392-469)||(13712229-13712306)
chr4 (6-82)||(1505593-1505669)
chr4 (392-469)||(5579341-5579418)
chr4 (6-82)||(13702199-13702275)
chr4 (6-82)||(13712692-13712768)
chr4 (157-260)||(24627343-24627447)
chr4 (392-469)||(31666507-31666586)
chr4 (172-255)||(1604710-1604792)
chr4 (714-797)||(4848321-4848404)
chr4 (12-87)||(5578867-5578942)
chr4 (392-450)||(1505138-1505196)
chr4 (475-553)||(5199220-5199298)
chr4 (6-87)||(5908749-5908830)
chr4 (193-261)||(3329495-3329563)
chr4 (14-80)||(5599476-5599542)
chr4 (99-219)||(31663815-31663935)
chr4 (186-232)||(20349577-20349623)
chr4 (223-300)||(31666338-31666415)
chr4 (674-708)||(5140867-5140901)
chr4 (178-242)||(10667722-10667787)
chr4 (178-242)||(10881867-10881932)
[»] chr1 (17 HSPs)
chr1 (94-472)||(14115477-14115857)
chr1 (128-472)||(15088031-15088378)
chr1 (128-472)||(22210639-22210986)
chr1 (143-472)||(22219389-22219721)
chr1 (139-301)||(7898935-7899096)
chr1 (11-85)||(14115303-14115377)
chr1 (128-262)||(22207290-22207423)
chr1 (392-472)||(22207076-22207156)
chr1 (129-469)||(51843718-51844059)
chr1 (139-297)||(44193440-44193599)
chr1 (392-470)||(7898768-7898847)
chr1 (172-261)||(14150133-14150222)
chr1 (394-469)||(44193666-44193741)
chr1 (167-251)||(1991596-1991680)
chr1 (177-251)||(7064025-7064098)
chr1 (167-269)||(17914234-17914336)
chr1 (186-246)||(1944787-1944847)
[»] chr7 (17 HSPs)
chr7 (104-472)||(42786445-42786813)
chr7 (104-472)||(48477170-48477541)
chr7 (94-473)||(4340313-4340696)
chr7 (94-301)||(21959142-21959349)
chr7 (105-301)||(19802191-19802389)
chr7 (129-472)||(3078996-3079341)
chr7 (392-469)||(21959444-21959521)
chr7 (392-472)||(3080627-3080707)
chr7 (395-469)||(19802018-19802092)
chr7 (11-77)||(21958969-21959035)
chr7 (165-261)||(3737866-3737963)
chr7 (6-87)||(19802500-19802581)
chr7 (6-77)||(4340803-4340874)
chr7 (6-93)||(48477612-48477699)
chr7 (6-87)||(42786254-42786335)
chr7 (176-242)||(20920353-20920419)
chr7 (178-255)||(1454814-1454890)
[»] chr6 (19 HSPs)
chr6 (94-469)||(33301060-33301437)
chr6 (102-304)||(28144331-28144533)
chr6 (139-464)||(31113609-31113933)
chr6 (94-298)||(34256125-34256329)
chr6 (94-469)||(8519050-8519428)
chr6 (128-301)||(5131307-5131479)
chr6 (322-469)||(6405888-6406036)
chr6 (392-469)||(5131558-5131636)
chr6 (397-469)||(34256433-34256505)
chr6 (392-474)||(28144155-28144237)
chr6 (6-82)||(5131094-5131170)
chr6 (419-473)||(8706825-8706879)
chr6 (5-87)||(34255945-34256027)
chr6 (6-71)||(26620840-26620905)
chr6 (6-71)||(26726819-26726884)
chr6 (6-77)||(8519535-8519606)
chr6 (196-260)||(6406191-6406256)
chr6 (11-76)||(28144650-28144715)
chr6 (6-87)||(33300897-33300978)
[»] scaffold0046 (2 HSPs)
scaffold0046 (94-469)||(89614-89991)
scaffold0046 (6-87)||(90080-90161)
[»] chr8 (10 HSPs)
chr8 (94-469)||(20810952-20811331)
chr8 (94-297)||(5557073-5557276)
chr8 (128-270)||(25336101-25336242)
chr8 (128-301)||(3166390-3166562)
chr8 (162-262)||(4844424-4844524)
chr8 (397-474)||(5556890-5556967)
chr8 (392-469)||(4844657-4844732)
chr8 (176-263)||(25004005-25004093)
chr8 (24-87)||(20810791-20810854)
chr8 (11-87)||(5557374-5557451)
[»] chr2 (12 HSPs)
chr2 (257-473)||(2696543-2696763)
chr2 (128-469)||(31347352-31347698)
chr2 (128-301)||(31314590-31314761)
chr2 (395-474)||(31314412-31314491)
chr2 (153-246)||(29747145-29747238)
chr2 (162-260)||(38211334-38211432)
chr2 (180-261)||(18010896-18010977)
chr2 (167-244)||(17863231-17863308)
chr2 (188-261)||(33125412-33125485)
chr2 (156-219)||(29742309-29742372)
chr2 (162-255)||(24837195-24837287)
chr2 (197-246)||(33119191-33119240)
[»] chr5 (11 HSPs)
chr5 (94-298)||(41527826-41528030)
chr5 (128-251)||(26075607-26075730)
chr5 (397-469)||(41527650-41527722)
chr5 (158-255)||(22301875-22301971)
chr5 (194-262)||(37456209-37456279)
chr5 (158-255)||(21098948-21099044)
chr5 (11-87)||(41528128-41528205)
chr5 (143-217)||(23213657-23213730)
chr5 (175-269)||(19209916-19210009)
chr5 (392-445)||(37456413-37456464)
chr5 (198-255)||(28739557-28739613)
[»] chr3 (18 HSPs)
chr3 (94-301)||(14521581-14521788)
chr3 (94-297)||(19359802-19360005)
chr3 (128-472)||(5835055-5835393)
chr3 (99-469)||(2747012-2747387)
chr3 (128-301)||(18111036-18111208)
chr3 (139-469)||(28034112-28034444)
chr3 (162-262)||(37489358-37489458)
chr3 (139-262)||(19440699-19440821)
chr3 (128-270)||(5938361-5938502)
chr3 (395-469)||(14521885-14521959)
chr3 (392-472)||(19440499-19440579)
chr3 (393-469)||(37489146-37489222)
chr3 (399-469)||(18110863-18110933)
chr3 (6-87)||(14521402-14521483)
chr3 (397-469)||(19360112-19360184)
chr3 (156-242)||(7782837-7782923)
chr3 (392-457)||(11418187-11418252)
chr3 (162-241)||(27170130-27170209)
[»] scaffold0060 (1 HSPs)
scaffold0060 (139-478)||(45168-45508)
[»] scaffold0158 (5 HSPs)
scaffold0158 (105-301)||(37390-37588)
scaffold0158 (172-301)||(1-132)
scaffold0158 (395-469)||(230-304)
scaffold0158 (395-475)||(37687-37767)
scaffold0158 (6-87)||(37198-37279)
[»] scaffold0024 (1 HSPs)
scaffold0024 (101-261)||(63452-63613)
[»] scaffold0043 (2 HSPs)
scaffold0043 (131-255)||(70098-70221)
scaffold0043 (392-469)||(70367-70444)
[»] scaffold0018 (1 HSPs)
scaffold0018 (392-473)||(66229-66311)


Alignment Details
Target: chr4 (Bit Score: 701; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 6 - 810
Target Start/End: Complemental strand, 4852280 - 4851457
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataattagagttaatcctctgatcg 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4852280 agaatcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacaatatattggacatatgtttataattagagttaatcctctgatcg 4852181  T
Q  106 ctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggatag 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4852180 ctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggcgatcctaggttccccgaggttgcctacaacctaggatag 4852081  T
Q  206 gtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaa---gaagt 302  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  4852080 gtggaactcagtgaaacatcttgtctcatcccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagaagt 4851981  T
Q  303 agcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaatt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4851980 agcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaatt 4851881  T
Q  403 ttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcatattccctaccgttcgttgcagccataacg 502  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  4851880 ttaatgtatccgacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcatattccctaccgttcgttgcagccgtaaca 4851781  T
Q  503 acgtttcgttgccgcgtaataagattttgctttctttgtttatgtga----------------ttttggttatgtgatttttgttctctatgttataacg 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||    
T  4851780 acgtttcgttgccgcgtaataagattttgctttctttgtttatgtgatttttgtttttgtgatttttggttatgtgatttttgttctctatgttataacg 4851681  T
Q  587 gagaagaacaatatctgacactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaacctttttataaaaccttggcaacaactaaac 686  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4851680 gagaagaacagtatctgacactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaacctttttataaaaccttggcaacaagtaaac 4851581  T
Q  687 tactaatgctcacatacgtatttaatctttcgttggttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcacttcttagtccct 786  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4851580 tactaatgctcacatacgtatttaatctttcgttgtttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcactccttagtccct 4851481  T
Q  787 gtacctttttgcggtggccatttt 810  Q
    ||||||||||||||||||||||||    
T  4851480 gtacctttttgcggtggccatttt 4851457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 104 - 472
Target Start/End: Original strand, 2895087 - 2895455
Alignment:
Q  104 cgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggat 203  Q
    ||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||    
T  2895087 cgctcagttttgcataataaaattgtataaacccaaaatgggttgagtttagtaacagatggcgatcctaggttccccgaggttgcctatagcctaggat 2895186  T
Q  204 aggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagta 303  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||| |    
T  2895187 aggtggaactcactgagacatcttgtctcaccccaatcccttttatttatttcagatatacaagttattatacgacaagatggtttgtgatgaagaagaa 2895286  T
Q  304 gcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaattt 403  Q
    | |||||||||||||| ||||||||| |||||||||||||  ||||||| | || |||||||| |||||||||||||||||||| |||||||||||||||    
T  2895287 gtagcttgaccatatagagtacacgtcagtggaactattttggaggtaataggcaagaaattctatgatttgttcagagaatatctatttattgtaattt 2895386  T
Q  404 taatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2895387 taatgtatccgacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 2895455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 99 - 469
Target Start/End: Complemental strand, 5599398 - 5599025
Alignment:
Q  99 ctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacct 198  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||    
T  5599398 ctgatcgctcagttatgcataatgaaatcgtttaaacccaaaatgggttgaggttagaaacagatggggatcctaggttccctgaggttgcctacaacct 5599299  T
Q  199 aggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaag 298  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||| ||||| |||| ||||||    
T  5599298 aggatagatggaactcactgagacatcttgtctcaccccaatcctttttatttatttcagttgtacaagttattatacgataagatggctcgtgatgaag 5599199  T
Q  299 aagta---gcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttat 395  Q
    ||| |   ||| || ||| || ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||    
T  5599198 aagcagacgcatctagactatgtaaagtacacgttagtggaactatttctgaggtaataggcgagaaattctatgatttgttcagagaatatttctttat 5599099  T
Q  396 tgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599098 tgtaacttcaatgtatccgacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 5599025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 104 - 472
Target Start/End: Complemental strand, 5908639 - 5908268
Alignment:
Q  104 cgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggat 203  Q
    ||||||||| |||||| | |||| ||||||| | |||||||||||||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||    
T  5908639 cgctcagttttgcatagtaaaattgtataaatccaaaatgggttgagtttagtaacagatggcgatcctaggttccccgaggttgcctatagcctaggat 5908540  T
Q  204 aggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaat---gaagaa 300  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||   ||||||    
T  5908539 aggtggaactcactgagacatcttgtctcaccccaatcccttttatttatttcagatatacaagttattatacgacaagatggttcgtgatgaagaagaa 5908440  T
Q  301 gtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaa 400  Q
    | || |||||||||||||| ||||||||| |||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| |||    
T  5908439 gaagtagcttgaccatatagagtacacgtcagtggaactatttcggaggtaacatgcaagaaattctatgatttgttcagagaatatctatttattataa 5908340  T
Q  401 ttttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5908339 ttttaatgtatccgacgccaagtttaacacacatgctagatatcctaggtgatttctagtaagggtgtttca 5908268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 94 - 301
Target Start/End: Original strand, 5579040 - 5579246
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||  ||| |||||||||||||||||| || |||||    
T  5579040 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagtttagtaacagctggcgatcctaggttccccgagatttcctac 5579139  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||| |||||||||||||||| || |||| |||||||  |||||||| ||||||||||||||||| ||||||||||||||| | | ||||||||||||    
T  5579140 agcctatgataggtggaactcaccgagacattttgtctc-acccaatcctttttatttatttcagatgtacaagttattatacaacatgatggttcgtaa 5579238  T
Q  294 tgaagaag 301  Q
    ||||||||    
T  5579239 tgaagaag 5579246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 139 - 464
Target Start/End: Original strand, 6735721 - 6736049
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    ||||||||||||||||||  || |||| ||||||||||||||  || || |||||| | |||||||||||||||||||||| ||||| ||||||  ||||    
T  6735721 aaatgggttgagtttagag-catatggcgatcctaggttccctaagatttcctacagcttaggataggtggaactcactgagacatcatgtctcatccca 6735819  T
Q  239 atcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagtacacgttagtgg 335  Q
    |||| |||||||||||| |||||| |||||||||| |||  || |||||| || ||||||||| || |   | | ||||||||||||| || || | |||    
T  6735820 atccattttatttatttaagatattcaagttattagacgtcagcatggtttgtgatgaagaagcagaagttgttggaccatataaagttcaagtcactgg 6735919  T
Q  336 aactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagtttaacacacat 434  Q
     | |||||| ||||||  |  |||||| ||| |||  ||  ||| || | |||| | |||||||||||||||||||||||| ||||| ||||||||||||    
T  6735920 tattatttcagaggtataagacgagaatttctatgtcttaatcataggaaatttttattattgtaattttaatgtatccaatgccaaatttaacacacat 6736019  T
Q  435 gctagatatcctaggtgatttctagtaggg 464  Q
    |||||||||||||||| |||||||||||||    
T  6736020 gctagatatcctaggtaatttctagtaggg 6736049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 1505456 - 1505284
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    ||||||| || ||||||||||||||||||| || |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||    
T  1505456 gtataaatctgaaatgggttgagtttagaa-cagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactaagacatctt 1505358  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    ||||| ||||||||||||||||||||||||||||| || |||| || || | |  ||||||||| |||||||||    
T  1505357 gtctcaccccaatcccttttatttatttcagatattcaggttactagacaacatcatggttcgtgatgaagaag 1505284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 556 - 713
Target Start/End: Complemental strand, 4851544 - 4851387
Alignment:
Q  556 ttatgtgatttttgttctctatgttataacggagaagaacaatatctgacactccttagtccctgtacctttttgtggtggccattttcaaggtaacaaa 655  Q
    |||||| ||||||||||  ||||||| |||||||||||||  |||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4851544 ttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcactccttagtccctgtacctttttgcggtggccattttcacggtaacaaa 4851445  T
Q  656 cctttttataaaaccttggcaacaactaaactactaatgctcacatacgtatttaatc 713  Q
     |||||| || |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  4851444 actttttttagaaccttggcaactactaaactactgatgttcacatacgtatttaatc 4851387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 13702074 - 13701902
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  |||| |||||||||||||| || |||| |||| |||||| || ||| |||| ||||||||||||||||||||||||||||| |||||||    
T  13702074 gtataaacccgaaataggttgagtttagaa-cagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatctt 13701976  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
     |||| |||||||||||||||||||||| |||||| || |||| || ||||    ||||||||| |||||||||    
T  13701975 atctcaccccaatcccttttatttattttagatattcaggttactagacgacgtcatggttcgtgatgaagaag 13701902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 13712567 - 13712395
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  |||| |||||||||||||| || |||| |||| |||||| || ||| |||| ||||||||||||||||||||||||||||| |||||||    
T  13712567 gtataaacccgaaataggttgagtttagaa-cagatggcgatcgtaggtttcctgagattgcgtacaacctaggataggtggaactcactgagacatctt 13712469  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
     |||| |||||||||||||||||||||| |||||| || |||| || ||||    ||||||||| |||||||||    
T  13712468 atctcaccccaatcccttttatttattttagatattcaggttactagacgacgtcatggttcgtgatgaagaag 13712395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 473 - 630
Target Start/End: Complemental strand, 4848464 - 4848321
Alignment:
Q  473 tattccctaccgttcgttgcagccataacgacgtttcgttgccgcgtaataagattttgctttctttgtttatgtgattttggttatgtgatttttgttc 572  Q
    |||| ||||||||||||||||||| ||||||||||||||  || ||||||||||||||| |||| ||||||||||||||||              |||||    
T  4848464 tatttcctaccgttcgttgcagccgtaacgacgtttcgtcaccacgtaataagattttgttttcgttgtttatgtgatttt--------------tgttc 4848379  T
Q  573 tctatgttataacggagaagaacaatatctgacactccttagtccctgtacctttttg 630  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  4848378 tctatgttataacggagaagaacagaatcagacactccttagtccctgtacctttttg 4848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 13701813 - 13701736
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  13701813 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgtt 13701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 13712306 - 13712229
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  13712306 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtcggggtgtt 13712229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 1505669 - 1505593
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttat 82  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  1505669 agaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattggatatatgtttat 1505593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 5579341 - 5579418
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||||||||| ||| ||| ||||| |||| ||||||||||||||||||||||  ||||||||||||||||||    
T  5579341 ttattgtaattttaatatattcaatgccaaatttagcacacatgctagatatcctaggaaatttctagtaggggtgtt 5579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 13702275 - 13702199
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttat 82  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||    
T  13702275 agaaccagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattggatatatgtttat 13702199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 13712768 - 13712692
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttat 82  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||    
T  13712768 agaaccagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattggatatatgtttat 13712692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 24627447 - 24627343
Alignment:
Q  157 aacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatccctttta-tttattt 255  Q
    |||| |||| |||| ||||||||| ||| ||||||||| ||||||||||||||||||| |||| ||||| ||| || ||||||||| ||||| |||||||    
T  24627447 aacatatggcgatcataggttccctgagattgcctacatcctaggataggtggaactcgctgagacatcatgtgtcaccccaatcctttttattttattt 24627348  T
Q  256 cagat 260  Q
    |||||    
T  24627347 cagat 24627343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 31666507 - 31666586
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagat--atcctaggtgatttctagtaggggtgtt 469  Q
    ||||| |||||||||||||||||| ||||||||||||| | |||||||||  ||||||||| ||||||||||||||||||    
T  31666507 ttattctaattttaatgtatccaatgccaagtttaacataaatgctagataaatcctaggtaatttctagtaggggtgtt 31666586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 1604710 - 1604792
Alignment:
Q  172 taggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    ||||||||| || || |||||||||||||||||||||||||||||||| || || |||||| |||||||||| |||||||||||    
T  1604710 taggttccctgaagtcgcctacaacctaggataggtggaactcactgagacctcctgtctcaccccaatccc-tttatttattt 1604792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 714 - 797
Target Start/End: Complemental strand, 4848404 - 4848321
Alignment:
Q  714 tttcgttggttatgtaatttttgttcgttatgttaaaacggagaagaacggtatcaggcacttcttagtccctgtacctttttg 797  Q
    |||||||| |||||| ||||||||||  ||||||| ||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  4848404 tttcgttgtttatgtgatttttgttctctatgttataacggagaagaacagaatcagacactccttagtccctgtacctttttg 4848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 5578867 - 5578942
Alignment:
Q  12 agagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    ||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||| ||||    
T  5578867 agagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattggatatatgattatgatta 5578942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 1505196 - 1505138
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggt 450  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  1505196 ttattgtaattttagtgtatccaatgccaaatttaacacacatgctagatatcctaggt 1505138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 553
Target Start/End: Original strand, 5199220 - 5199298
Alignment:
Q  475 ttccctaccgttcgttgcagccataacgacgtttcgttgccgcgtaataagattttgctttctttgtttatgtgatttt 553  Q
    |||||||||||||||||||||| |||||||||||||| | ||| |||||| ||||| ||||| |||||||| |||||||    
T  5199220 ttccctaccgttcgttgcagccgtaacgacgtttcgtcgtcgcataataaaatttttctttcgttgtttatttgatttt 5199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 5908830 - 5908749
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  | ||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  5908830 agaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 5908749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 3329495 - 3329563
Alignment:
Q  193 caacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||| |||  |||||||||||||    
T  3329495 caacctaagataggtggaactcactgagacatcttgtctcaccccaatccttttactttatttcagata 3329563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 5599542 - 5599476
Alignment:
Q  14 agacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgttt 80  Q
    ||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||    
T  5599542 agacatactcagataagtatgtcaaagtataagctatactagaatacgatatattggatttatgttt 5599476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 31663815 - 31663935
Alignment:
Q  99 ctgatcgctcagttatgcataatgaa-atcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacc 197  Q
    ||||||||||||||||| || || || || |||||||||  |||||||||| |||||||| || |||  |||| |||||| |  ||| ||| ||||||||    
T  31663815 ctgatcgctcagttatgtatgataaagattgtataaacccgaaatgggttgtgtttagaa-catatgtcgatcataggtttcttgagattgtctacaacc 31663913  T
Q  198 taggataggtggaactcactga 219  Q
    ||||||||||||||||||||||    
T  31663914 taggataggtggaactcactga 31663935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 20349577 - 20349623
Alignment:
Q  186 ttgcctacaacctaggataggtggaactcactgatacatcttgtctc 232  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  20349577 ttgcctacagcctagtataggtggaactcactgagacatcttgtctc 20349623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 31666338 - 31666415
Alignment:
Q  223 atcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaa 300  Q
    |||||||||| ||||||||||||||| ||||||||||||| || ||||  | |||| |  ||||||||| ||||||||    
T  31666338 atcttgtctcaccccaatcccttttacttatttcagatattcaggttaccagacgacataatggttcgtgatgaagaa 31666415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 708
Target Start/End: Original strand, 5140867 - 5140901
Alignment:
Q  674 gcaacaactaaactactaatgctcacatacgtatt 708  Q
    ||||||||||||| |||||||||||||||||||||    
T  5140867 gcaacaactaaacaactaatgctcacatacgtatt 5140901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 10667787 - 10667722
Alignment:
Q  178 ccccgaggttgcctacaacctagga-taggtggaactcactgatacatcttgtctctccccaatcc 242  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| ||||  ||||||  ||||||||    
T  10667787 ccccgaggttacctacaacctaggattaggtagaactcactgagacattatgtctcatcccaatcc 10667722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 10881932 - 10881867
Alignment:
Q  178 ccccgaggttgcctacaacctagga-taggtggaactcactgatacatcttgtctctccccaatcc 242  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| ||||  ||||||  ||||||||    
T  10881932 ccccgaggttacctacaacctaggattaggtagaactcactgagacattatgtctcatcccaatcc 10881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 94 - 472
Target Start/End: Original strand, 14115477 - 14115857
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||| | |    
T  14115477 atcctctgattgctca-ttatgcataatgaaatcgtataaatctaaaatgggttgagtttagaaacaaatggcgatcataggtttcccgaggttgcttgc 14115575  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | ||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14115576 agcctaggataggtggaacgcgctgagacatcttgtctcaccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 14115675  T
Q  294 t---gaagaagtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatattta 390  Q
    |   ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||    
T  14115676 tgaagaagaagtagcagcttgaccatataaaatacacgttagtggaactatttcttaggtaacatgcgagaaattctatgatttgttcaaagaatattta 14115775  T
Q  391 tttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14115776 tttattgtaattttaatgtatccgatgccaagtttaacacacatgctagatatcctaggtgatttctagtatgggtgtttca 14115857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 128 - 472
Target Start/End: Complemental strand, 15088378 - 15088031
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  ||||||||| ||||||||| || |||| |||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||| |    
T  15088378 gtataaacccgaaatgggttaagtttagaa-cagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcct 15088280  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagcagct---tgaccatataaagta 324  Q
    ||||| ||||||||||||||||||||||||||||| || |||  || | || || || ||||||  |||||| | || || |    || ||||  ||||     
T  15088279 gtctcaccccaatcccttttatttatttcagatattcaggttgctagatgacagaatagttcgtggtgaagaggcagaagttgtcggatcataggaagtt 15088180  T
Q  325 cacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagt 423  Q
    ||||| ||||| | |||||| ||||||  |  |||| | ||| ||  ||  || |||| | |||| | |||||| ||||||||||||||||| |||||||    
T  15088179 cacgtaagtggtattatttcagaggtataagacgagcatttccatatttcattaagaggaaatttttattattgaaattttaatgtatccaatgccaagt 15088080  T
Q  424 ttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  15088079 ttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 15088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 128 - 472
Target Start/End: Complemental strand, 22210986 - 22210639
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  ||||||||| ||||||||| || |||| |||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||| |    
T  22210986 gtataaacccgaaatgggttaagtttagaa-cagatggcgatcctaggttccctgcgattgcctacaacctaggataggtggaactcactgagacatcct 22210888  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagcagct---tgaccatataaagta 324  Q
    ||||| ||||||||||||||||||||||||||||| || |||  || | || || || ||||||  |||||| | || || |    || ||||  ||||     
T  22210887 gtctcaccccaatcccttttatttatttcagatattcaggttgctagatgacagaatagttcgtggtgaagaggcagaagttgtcggatcataggaagtt 22210788  T
Q  325 cacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagt 423  Q
    ||||| ||||| | |||||| ||||||  |  |||| | ||| ||  ||  || |||| | |||| | |||||| ||||||||||||||||| |||||||    
T  22210787 cacgtaagtggtattatttcagaggtataagacgagcatttccatatttcattaagaggaaatttttattattgaaattttaatgtatccaatgccaagt 22210688  T
Q  424 ttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  22210687 ttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 22210639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 143 - 472
Target Start/End: Complemental strand, 22219721 - 22219389
Alignment:
Q  143 gggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcc 242  Q
    ||||| ||||||||| || |||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||    
T  22219721 gggttaagtttagaa-cagatggcgatcctaggttccctgcgattgcctacaacctaggataggtgcaactcactgagacatcctgtctcaccccaatcc 22219623  T
Q  243 cttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagcagct---tgaccatataaagtacacgttagtggaact 339  Q
    |||||||||||||||||||| || |||  || | || || |||||||||  |||||| | || || |    || ||||  |||| ||||| | ||| | |    
T  22219622 cttttatttatttcagatattcaggttgctagatgacagaatggttcgtggtgaagaggcagaagttgtcggatcataggaagttcacgtcaatggtatt 22219523  T
Q  340 atttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagtttaacacacatgcta 438  Q
    ||||| ||||||  |  |||| | ||| ||  ||  || |||| | |||| | |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  22219522 atttcagaggtataagacgagcatttccatatttcattaagaggaaatttttattattgaaattttaatgtatccaatgccaagtttaacacacatgcta 22219423  T
Q  439 gatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||||||||||| || ||||||||||||||||||    
T  22219422 gatatcctaggtaatgtctagtaggggtgtttca 22219389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 139 - 301
Target Start/End: Complemental strand, 7899096 - 7898935
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    ||||||||||||||||||| ||||||  |||||||||||||  ||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  7899096 aaatgggttgagtttagaa-caaatgtcgatcctaggttccttgagattgcctacaatctaggataggtggaactcactgagacatcttgtctcacccca 7898998  T
Q  239 atcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    |||||||||||||||||||||||| ||||||| || ||||    ||||||||| |||||||||    
T  7898997 atcccttttatttatttcagatattcaagttactagacgacgtcatggttcgtgatgaagaag 7898935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14115303 - 14115377
Alignment:
Q  11 cagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataat 85  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14115303 cagagacatacgtagataagtatgtcaaagtataagctataccagaatacgatatattggacatatgtttataat 14115377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 22207423 - 22207290
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  ||||||||| |||||||||  | |||| |||| ||||||||| |   |||||||||||||||||||||||||||||||||| ||||| |    
T  22207423 gtataaacccgaaatgggttaagtttagaat-agatggcgatcttaggttccctgcaattgcctacaacctaggataggtggaactcactgagacatcct 22207325  T
Q  228 gtctctccccaatcccttttatttatttcagatat 262  Q
    ||||| |||||||||||||||||||||||||||||    
T  22207324 gtctcaccccaatcccttttatttatttcagatat 22207290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 22207156 - 22207076
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  22207156 ttattgaaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttca 22207076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 129 - 469
Target Start/End: Complemental strand, 51844059 - 51843718
Alignment:
Q  129 tataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttg 228  Q
    ||||||||  ||||||||||||||||||| || |||  |||| |||| |||| ||| ||||||||| | || ||||||||||||||||||| ||||| ||    
T  51844059 tataaacccgaaatgggttgagtttagaa-catatgacgatcttagggtccctgagattgcctacaccttaagataggtggaactcactgagacatcatg 51843961  T
Q  229 tctctccccaatcccttttatttatttcagatatacaa--gttattatacgataggatggttcgtaatgaagaagtagcagcttgaccatataaagtaca 326  Q
    |||| |||||||   |||||||||||| |||||| ||   |||| || |||| |  | ||||||| ||||||||| ||  ||  ||| ||||||| | ||    
T  51843960 tctcaccccaattatttttatttatttaagatattcagaggttactagacgacataaaggttcgtgatgaagaagcagttgccggactatataaaattca 51843861  T
Q  327 cgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagag--aatatttatttattgtaattttaatgtatccaacgccaagtt 424  Q
    ||| ||||| | ||||||  |||||  |  |||||| || | |  ||| ||| | |  ||| |||||| ||||||||||||||||||||||  |||||||    
T  51843860 cgtcagtggtattatttcaaaggtataagacgagaatttta-tattttattctgcgggaatttttatt-attgtaattttaatgtatccaataccaagtt 51843763  T
Q  425 taacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||| |||||||||||||||| || ||||||| |||||||    
T  51843762 taacacacacgctagatatcctaggtaatgtctagtaagggtgtt 51843718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 44193440 - 44193599
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    |||||||||||||||||||  | |||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| || |||| | ||||| |||||    
T  44193440 aaatgggttgagtttagaat-agatggcgatcctaggttccttgagattgcctacaacctaggataggtggaactcaccgagacatttcgtctcacccca 44193538  T
Q  239 atcccttttatttat--ttcagatatacaagttattatacgataggatggttcgtaatgaa 297  Q
    ||||||||||||| |  ||||||||| || ||||||  |||| |  ||||||||| |||||    
T  44193539 atcccttttattttttgttcagatattcaggttattggacgacataatggttcgtgatgaa 44193599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 7898847 - 7898768
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggt-gatttctagtaggggtgttt 470  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7898847 ttattgtaattttaatgtatccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgttt 7898768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 14150133 - 14150222
Alignment:
Q  172 taggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    ||||||||||||| |||||||||   ||||||||||||||||||| || ||||| |||||| ||||||||| |||  |||||||||||||    
T  14150133 taggttccccgagattgcctacagtttaggataggtggaactcaccgagacatcatgtctcaccccaatccttttattttatttcagata 14150222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 44193666 - 44193741
Alignment:
Q  394 attgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||| |||||||| |||||||||||||||| | ||||||||| ||||  || |||||||||||||||    
T  44193666 attgtaattttaaagtatccaatgccaagtttaacacacgtactagatatcttaggaaatgtctagtaggggtgtt 44193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 1991596 - 1991680
Alignment:
Q  167 gatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttattt 251  Q
    |||| |||||| |||||| |||| |||||| || ||||||||||||||||||| ||||| ||  || ||||||||||||||||||    
T  1991596 gatcataggtttcccgagattgcgtacaacttatgataggtggaactcactgagacatcatgcgtcaccccaatcccttttattt 1991680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 7064098 - 7064025
Alignment:
Q  177 tccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttattt 251  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||  |||||| ||| ||| ||||||||||    
T  7064098 tccccaagattgcctacaacctaggataggtggaactcactgagacattatgtctcaccctaat-ccttttattt 7064025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 17914336 - 17914234
Alignment:
Q  167 gatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaa 266  Q
    |||| ||||||||  |||||||||||||  ||||||||||||||||||||| | ||||| ||||||  | || |||||||  |||||||||||| ||| |    
T  17914336 gatcataggttccttgaggttgcctacattctaggataggtggaactcactaagacatcatgtctcatctcattccctttattttatttcagatgtacta 17914237  T
Q  267 gtt 269  Q
    |||    
T  17914236 gtt 17914234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 1944787 - 1944847
Alignment:
Q  186 ttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttt 246  Q
    ||||||||||||||||| |||||||||||||| | |||||  ||||| |||||||| ||||    
T  1944787 ttgcctacaacctaggaaaggtggaactcactaagacatccggtctcaccccaatcgcttt 1944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 104 - 472
Target Start/End: Original strand, 42786445 - 42786813
Alignment:
Q  104 cgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggat 203  Q
    ||||||||| |||||||| |||| ||||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||    
T  42786445 cgctcagttttgcataataaaattgtataaacccaaaataggttgagtttagtaacagatggcgatcctaggttccccgaggttgcctatagcctaggat 42786544  T
Q  204 aggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagta 303  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |    
T  42786545 aggtggaactcactgagacatcttgtctcaccccaatcccttttatttatttcagatatacaagttattatacgacaagatggttcgtgatgaagaagaa 42786644  T
Q  304 gcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaattt 403  Q
    | |||||||||||||| ||||||||| |||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||    
T  42786645 gtagcttgaccatatagagtacacgtcagtggaactatttcggaggtaacaggcaagaaattctatgatttgttcagagaatatctatttattgtaattt 42786744  T
Q  404 taatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42786745 taatgtatccgacgccaagtttaacacaaatgctagatatcctaggtgatttctagtaggggtgtttca 42786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 104 - 472
Target Start/End: Complemental strand, 48477541 - 48477170
Alignment:
Q  104 cgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggat 203  Q
    ||||||||| |||||||| |||| ||||||||| ||||| |||||||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||    
T  48477541 cgctcagttttgcataataaaattgtataaacccaaaataggttgagtttagtaacagatggcgatcctaggttccccgaggttgcctatagcctaggat 48477442  T
Q  204 aggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatga---agaa 300  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||   ||||    
T  48477441 aggtggaactcactgagacatcttgtctcaccccaatcccttttatttatttcagatatacaagttattatacgacaagatggttcgtgatgatgaagaa 48477342  T
Q  301 gtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaa 400  Q
    | || |||||||||||||| ||||||| | |||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||||||    
T  48477341 gaagtagcttgaccatatagagtacacttcagtggaactatttcggaggtaacaggcaagaaattctatgatttgttcagagaatatctatttattgtaa 48477242  T
Q  401 ttttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48477241 ttttaatgtatccgacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 48477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 94 - 473
Target Start/End: Complemental strand, 4340696 - 4340313
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||    
T  4340696 atcccctgatcgctcagttatgcataatgaaatcatataaacctgaaatgggttgagtttagtaacagatgatgatcctaggtttcccgaggttgcctac 4340597  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||||  ||||||||||||||||| || |||||||||||||| | |||||||||| |    
T  4340596 agcctaggataggtggaactcactgagacattttgtctcaccccaatcatttttatttatttcagatgtataagttattatacgacatgatggttcgtga 4340497  T
Q  294 tg---aagaagtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcag-agaatattt 389  Q
     |   ||| || || |||| || |||||||||| ||||| ||||| | |||||| ||||||  |  |||| | ||| ||   || ||||| ||||  |||    
T  4340496 agagaaagcagaagtagctggatcatataaagttcacgtcagtggtattatttcagaggtataagacgagcatttccatatcttattcagaagaaatttt 4340397  T
Q  390 atttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcat 473  Q
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  4340396 tattattgtaattttaatgcatccaccgccaagtttaacacacatgctagatatcctaggtaatgtctagtaggggtgtttcat 4340313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 94 - 301
Target Start/End: Original strand, 21959142 - 21959349
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  21959142 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgagttgagtttagtaacaaatggcgatcctaggttccccgagattgcctac 21959241  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||| | | |||||||||| |    
T  21959242 agcctaggataggtggaactcactgagacattttgtctcaccccaatccattttatttatttcagatgtacaagttattatacaacatgatggttcgtga 21959341  T
Q  294 tgaagaag 301  Q
    ||||||||    
T  21959342 tgaagaag 21959349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 105 - 301
Target Start/End: Complemental strand, 19802389 - 19802191
Alignment:
Q  105 gctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggata 204  Q
    |||||||| |||||||| ||||| ||||||||  ||||||||||||||||| |||| |||| |||| ||||||||||||| ||||||||| |||||||||    
T  19802389 gctcagttttgcataataaaatcatataaacccgaaatgggttgagtttagtaacagatggcgatcgtaggttccccgagattgcctacagcctaggata 19802290  T
Q  205 ggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagt--tattatacgataggatggttcgtaatgaagaag 301  Q
    ||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||| |||||||  |||||||| | | |||||||||| |||||||||    
T  19802289 ggtggaactcactgagacattttgtctcaccccaatcctttttatttatttcagatgtacaagttatattatacaacatgatggttcgtgatgaagaag 19802191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 129 - 472
Target Start/End: Original strand, 3078996 - 3079341
Alignment:
Q  129 tataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttg 228  Q
    ||||||||  |||||||||  |||||||| || |||| |||||||||||||| | | || ||||| ||||||||||||||||||||| ||| ||||| ||    
T  3078996 tataaaccagaaatgggttatgtttagaa-cagatggcgatcctaggttccctgcgatttcctactacctaggataggtggaactcattgagacatcctg 3079094  T
Q  229 tctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagcagct---tgaccatataaagtac 325  Q
    ||||  |||||||||||||||| ||||||||||| || |||  || | || || |||||||||  |||||| | || || |    || ||||  |||| |    
T  3079095 tctcagcccaatcccttttattcatttcagatattcaggttgctaaatgacagaatggttcgtggtgaagaggcagaagttgtcggatcataggaagttc 3079194  T
Q  326 acgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttatttattgtaattttaatgtatccaacgccaagttt 425  Q
    |||  ||||| | ||||||  |||||  |   ||| | ||| ||  ||  |||||| || ||||  |||||| ||||||||||||||||| | |||||||    
T  3079195 acgacagtggtattatttcaaaggtataaaatgagcatttccatatttcattcagaaaaaattttattattgaaattttaatgtatccaatgtcaagttt 3079294  T
Q  426 aacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||||    
T  3079295 aacacacatgctagatatcataggtaatgtctagtaggggtgtttca 3079341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 21959444 - 21959521
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  21959444 ttattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaatttctagtaggggtgtt 21959521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 3080707 - 3080627
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||    
T  3080707 ttattgaaattttaatgtatccaatgccaagtttcacacacatgctagatatcataggtaatgtctagtaggggtgtttca 3080627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 19802092 - 19802018
Alignment:
Q  395 ttgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||  | |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  19802092 ttgtaattttaatgtatccattgtcaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 19802018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 21958969 - 21959035
Alignment:
Q  11 cagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatg 77  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  21958969 cagagacatacttagataagtatgtcaaagtataagttataccagaatacgatatattggatatatg 21959035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 3737866 - 3737963
Alignment:
Q  165 gtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttt-tatttatttcagata 261  Q
    |||||| || |||||| ||| | ||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||| | |||||||||||||    
T  3737866 gtgatcatatgttccctgagatcgcctacaacctagaataggtggaactcactgagacatcatgtctcaccccaatccctttatttttatttcagata 3737963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 19802581 - 19802500
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  19802581 agaatcagagacatactcagataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 19802500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 4340874 - 4340803
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatg 77  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  4340874 agaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattggatatatg 4340803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 48477699 - 48477612
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataattagagtta 93  Q
    |||| |||||||||||  | ||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| |||| |||||    
T  48477699 agaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgattaaagtta 48477612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 42786254 - 42786335
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  | ||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  42786254 agaatcagagacatactcaaataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 42786335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 20920353 - 20920419
Alignment:
Q  176 ttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcc 242  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||  ||||||||    
T  20920353 ttccccgagattgcctacaacctaggataggtggaactcactgagacatcatgcctcatcccaatcc 20920419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 1454890 - 1454814
Alignment:
Q  178 ccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    ||||||| ||||||| | |||||||||| ||||||||||||| ||||  ||||||  |||||| ||||||||||||||    
T  1454890 ccccgagattgcctagagcctaggatagatggaactcactgagacattctgtctcatcccaat-ccttttatttattt 1454814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 94 - 469
Target Start/End: Original strand, 33301060 - 33301437
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| || | ||||||||||||||| |||||||||||    
T  33301060 atcccctgatcgctcagttatgcataatgaaatcgtttaaacccaaaatgggttgaggttagaaacagattgcgatcctaggttcccccaggttgcctac 33301159  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||| |    
T  33301160 aacctaggatagatggaactcactgagacatcttgtctcaccccaatcctttttatttatttcagatgtacaagttattatacgataagatggctcgtga 33301259  T
Q  294 tgaaga---agtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatattta 390  Q
    ||||||   ||  | |||| ||  || |||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||    
T  33301260 tgaagaggcagacgtagctgga-tatgtaaagtacacgtcagtggaactatttctgaggtaataggcgagaaattctatgatttgttcatagaatattta 33301358  T
Q  391 tttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301359 tttattgtaacttcaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 33301437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 28144533 - 28144331
Alignment:
Q  102 atcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctagg 201  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||  ||||     
T  28144533 atcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagtttagtaacagatggcgatcctaggttccccgagattgcctacagtctagt 28144434  T
Q  202 ataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    |||||||||||||||||| |||| |||||||  |||||||| ||||||||||||||||| ||||||||||||||| | | |||||||||| |||||||||    
T  28144433 ataggtggaactcactgagacattttgtctcagcccaatcctttttatttatttcagatgtacaagttattatacaacatgatggttcgtgatgaagaag 28144334  T
Q  302 tag 304  Q
    |||    
T  28144333 tag 28144331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 139 - 464
Target Start/End: Original strand, 31113609 - 31113933
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    ||||||||||||||||||| || ||| ||||||||||||||  ||| ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  31113609 aaatgggttgagtttagaa-catatgttgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcacccca 31113707  T
Q  239 atcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagtacacgttagtgg 335  Q
    ||||||||||||||||| |||||| ||||||| || |||  ||   ||||||| ||||||||| || |   | | ||||||||||||| ||||| | ||     
T  31113708 atcccttttatttatttgagatattcaagttactaaacgtcag---ggttcgtgatgaagaagcagaagttgttggaccatataaagttcacgtcattga 31113804  T
Q  336 aactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagtttaacacacat 434  Q
     | |||||  ||||||  |  |||| | ||| ||| ||| |||||||||| ||| | || ||||||||||||||||||||| ||||||||||||||||||    
T  31113805 tattattttagaggtataatacgag-atttctatgttttattcagagaatttttttattgttgtaattttaatgtatccaatgccaagtttaacacacat 31113903  T
Q  435 gctagatatcctaggtgatttctagtaggg 464  Q
    |||||||||||||||| |||||||||||||    
T  31113904 gctagatatcctaggtaatttctagtaggg 31113933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 94 - 298
Target Start/End: Original strand, 34256125 - 34256329
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||| |||| |||||||| ||||||||| ||||||||    
T  34256125 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagtttagtaacagatggcgatcctagattccccgagattgcctac 34256224  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | ||||||||||||||||||||||||  ||| ||||||| ||||||| | |||||||||| |||||  ||||||||||||||| | | |||||||||| |    
T  34256225 agcctaggataggtggaactcactgaggcattttgtctcaccccaattctttttatttatgtcagacgtacaagttattatacaacatgatggttcgtga 34256324  T
Q  294 tgaag 298  Q
    |||||    
T  34256325 tgaag 34256329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 94 - 469
Target Start/End: Complemental strand, 8519428 - 8519050
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||| ||||||||||| ||||| ||||||| | ||||||||||||||||| |||| ||||||||||||||||||  ||| ||||||||    
T  8519428 atccactgatcgctca-ttatgcataataaaatcatataaacatgaaatgggttgagtttagtaacagatggtgatcctaggttcctagagattgcctac 8519330  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    |||||| |||||||| |||||||| | |||| ||||||| || |||||| |||||||||||||| || ||||  ||||||||| | | |||||||||| |    
T  8519329 aacctaagataggtgaaactcacttagacattttgtctcacctcaatcctttttatttatttcatatgtacacattattatacaacatgatggttcgtga 8519230  T
Q  294 tg---aagaagtagcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttc-agagaatattt 389  Q
     |   ||| |  |  |||| ||||||||||||| ||||| ||||| | |||||| |||| |  |  |||| | ||| ||   || ||| | ||||  |||    
T  8519229 agagaaagcaaaaatagctggaccatataaagttcacgtcagtggtattatttcagaggcataagacgagcatttccatatcttattcaaaagaaatttt 8519130  T
Q  390 atttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
      ||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||| || |||||||||||||||    
T  8519129 tattattgtgattttaatgtatccactgccaagtttaacacgcatgctagatatcctaggtaatgtctagtaggggtgtt 8519050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 5131307 - 5131479
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  ||| ||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5131307 gtataaacccgaaaagggttgagtttagaa-cagatggcgatcctaggttccccgagattgcctacaacctaggataggtggaactcactgagacatctt 5131405  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    ||||| ||||||||||||||||||||||||||||| || |||| || ||||    ||||||||| |||||||||    
T  5131406 gtctcaccccaatcccttttatttatttcagatattcaggttactagacgacgtcatggttcgtgatgaagaag 5131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 322 - 469
Target Start/End: Complemental strand, 6406036 - 6405888
Alignment:
Q  322 gtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaa-tatttatttattgtaattttaatgtatccaacgcca 420  Q
    ||||||| |||||| |||||| | |||||| ||  |||| ||||| || |||||||||||||| | |||| ||||||||||||||||||||| |  ||||    
T  6406036 gtacacgctagtggtactattccagaggtatcaaacgagtaattctataatttgttcagagaaatttttaattattgtaattttaatgtatcaagtgcca 6405937  T
Q  421 agtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||| |||||||||||||||||| || |||||||||| |||||||    
T  6405936 agtttaacgcacatgctagatatcctatgtaatttctagtatgggtgtt 6405888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 5131558 - 5131636
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggt-gatttctagtaggggtgtt 469  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  5131558 ttattgtaattttaatgtatccaatgccaaatttaacacacatgctagatatcctaggtaaatttctagtaggggtgtt 5131636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 34256433 - 34256505
Alignment:
Q  397 gtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34256433 gtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 34256505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 392 - 474
Target Start/End: Complemental strand, 28144237 - 28144155
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcata 474  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||  |||||||||||||||||| ||||    
T  28144237 ttattgtaattttaatgtatccaatgccaattttaacatacatgctagatatcataggaaatttctagtaggggtgttacata 28144155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 5131094 - 5131170
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttat 82  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  5131094 agaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattggatatatgtttat 5131170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 419 - 473
Target Start/End: Original strand, 8706825 - 8706879
Alignment:
Q  419 caagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcat 473  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8706825 caagtttaacactcatgctagatatcctaggtgatttctagtaggggtgtttcat 8706879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 34255945 - 34256027
Alignment:
Q  5 gagaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    ||||| |||||||||||  | ||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  34255945 gagaatcagagacatactcatataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 34256027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 26620840 - 26620905
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattgga 71  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26620840 agaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 26620905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 26726819 - 26726884
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattgga 71  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26726819 agaatcagagacatactcagataagtatgtcaaagtataagttataccagaatacgatatattgga 26726884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 8519606 - 8519535
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatg 77  Q
    |||| |||||||||||  ||||||||||||||||||||||| ||| | |||||||||||||||||| |||||    
T  8519606 agaatcagagacatactcagataagtatgtcaaagtataagttatactagaatacgatatattggatatatg 8519535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 6406256 - 6406191
Alignment:
Q  196 cctaggataggtggaactcactgatacatcttgtctctccccaatccctttta-tttatttcagat 260  Q
    ||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||||||    
T  6406256 cctaggataggtgcaactcactgagacatcatgtctcaccccaatcccttttattttatttcagat 6406191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 28144715 - 28144650
Alignment:
Q  11 cagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatat 76  Q
    |||||||||||  ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||    
T  28144715 cagagacatactcagataagcatgtcaaagtataagttataccagaatacgatatattggatatat 28144650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 33300897 - 33300978
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  | ||||||||||||||||||||||||| | || |||||||| ||||||||||| ||||| ||||    
T  33300897 agaatcagagacatactcaaataagtatgtcaaagtataagctatactagtatacgatagattggacatatatttatgatta 33300978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 94 - 469
Target Start/End: Complemental strand, 89991 - 89614
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||| | | ||||||||    
T  89991 atcccctgatcgctcagtcatgcataatgaaatcgtataaacccaaaatgggttgagtttagaa-catatggcgatcctaggttccctgtgattgcctac 89893  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| | | |||||||| | |    
T  89892 agcctaggataggtggaactcactgagacatcttgtctcactccaatcccttttatttatttcagatatacaagttagtatacaacatgatggttcatga 89793  T
Q  294 tgaagaagta---gcagcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatattta 390  Q
     ||||||| |   | |||| ||| |||||||||||||||  |||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  89792 agaagaagcaaacgtagctggactatataaagtacacgtcggtggtactatttctgaggtaacaagcgagaaattctatgatttgttcagagaattttta 89693  T
Q  391 tttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  89692 tttattgtaattttaatgtatccagtaccaagtttaacgcacatgctagatatcctagaaaatttctagtaggggtgtt 89614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 90161 - 90080
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  90161 agaatcagagacatactcagataagtatgtcaaagtataagctataccagaatacgatatattggacatatgtttatgatta 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 3e-69; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 94 - 469
Target Start/End: Original strand, 20810952 - 20811331
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||| | ||| ||||||||    
T  20810952 atcccctgatcgctcagttatgcataatgaaatcgtataaacccaaaatggattgagtttagaaacagatggcgatcctaggttcactgagattgcctac 20811051  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    |||||||||||||||||||||||||| ||||  |||||| ||||||||||||| ||||||||| ||||| || |||| || |||  || ||||||||  |    
T  20811052 aacctaggataggtggaactcactgagacattctgtctcaccccaatccctttcatttatttctgatattcaggttactagacgtcagaatggttcggga 20811151  T
Q  294 tgaagaagtagcag---cttgaccatataaagtacacgttagtgg-aactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatattt 389  Q
    |||||||| || ||   || ||||||||||||| ||| | | ||| |  |||||   |||||  |  ||| || ||| ||   || | ||||| |  |||    
T  20811152 tgaagaagcagaagtcactggaccatataaagttcacatcaatggtatttattttaaaggtataagacgataatttctatatcttatccagaggaagttt 20811251  T
Q  390 atttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
      |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  20811252 tattattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctacgtaaattctagtaggggtgtt 20811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 94 - 297
Target Start/End: Complemental strand, 5557276 - 5557073
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||| || | |||| |||||||||||||||||| ||||||||    
T  5557276 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagcttagtaatagatggcgatcctaggttccccgagattgcctac 5557177  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||  ||||||||||||||| | | |||||||||| |    
T  5557176 agcctaggataggtggaactcactgagacattttgtctcaccccaattctttttatttatttcagacgtacaagttattatacaacatgatggttcgtga 5557077  T
Q  294 tgaa 297  Q
    ||||    
T  5557076 tgaa 5557073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 25336242 - 25336101
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||| ||||||||||||||||||| || |||| |||||||||||||| ||| ||||||| | |||||||||||||||||||||||  ||||| |    
T  25336242 gtataaacctgaaatgggttgagtttagaa-catatggcgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgggacatcct 25336144  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagtta 270  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||    
T  25336143 gtctcaccccaattccttttatttatttcagatattcaagtta 25336101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 3166390 - 3166562
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    ||||||||||||||||||||||||||||||| |  ||| |||||||||||||| ||| |||||||||||||||||||| |||||||||  || ||||| |    
T  3166390 gtataaacctaaaatgggttgagtttagaaa-aggtggcgatcctaggttccctgagattgcctacaacctaggatagatggaactcatcgagacatcat 3166488  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    ||||| |||||||| |||||||||||||||| ||| || |||| || |||| |  ||||||||| |||||||||    
T  3166489 gtctcaccccaatcacttttatttatttcagttattcaggttactagacgacataatggttcgtgatgaagaag 3166562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 4844424 - 4844524
Alignment:
Q  162 atggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||   |||| |||||| |||||||||||| || ||||||||||||    
T  4844424 atggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgcggcatcctgtctcaccccaatcccttctacttatttcagata 4844523  T
Q  262 t 262  Q
    |    
T  4844524 t 4844524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 5556967 - 5556890
Alignment:
Q  397 gtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcata 474  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  5556967 gtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacata 5556890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 4844657 - 4844732
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||  ||||||||||||||||||    
T  4844657 ttattgtaattttaatgtatccaatcccaagtttaacac--atgctagatatcctaggaaatttctagtaggggtgtt 4844732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 25004005 - 25004093
Alignment:
Q  176 ttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttt-tatttatttcagatata 263  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||| ||||  |||||| ||||||||||||| | |||||||||||||||    
T  25004005 ttccctgagattgcctacagcctaggataggtggaactcactgagacattctgtctcaccccaatccctttatttttatttcagatata 25004093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 20810791 - 20810854
Alignment:
Q  24 agataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||||    
T  20810791 agataagtatgtcaaagtataagctataccagaatacgatatattgtatatatgtttatgatta 20810854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 5557451 - 5557374
Alignment:
Q  11 cagagacatacgtagataagtatgtcaaagtataagctatcccagaatacg-atatattggacatatgtttataatta 87  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||||||| ||||    
T  5557451 cagagacatactcagataagtatgtcaaagtataagctataccagaatacgaatatattggatttatgtttatgatta 5557374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 4e-65; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 257 - 473
Target Start/End: Original strand, 2696543 - 2696763
Alignment:
Q  257 agatatacaagttattatacgataggatggttcgtaatgaagaagtagc---agcttgaccatataaagtacacgttagtggaactatttctgaggtaac 353  Q
    |||| ||||||||||||||| ||| ||||| |||| ||||||||| ||    |||| ||| || |||||||||||| ||||||||||||||||||||||     
T  2696543 agatgtacaagttattatacaataagatggctcgtgatgaagaagcagatgtagctggactatgtaaagtacacgtcagtggaactatttctgaggtaat 2696642  T
Q  354 acgcgagaaattcaatgatttgttcagagaatatttatttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgat 453  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  2696643 aggcgagaaattctatgatttgttcagagaatatttatttattgtaacttcaatgtatccgacgccaagtttaacacacatcctagatatcctaggtgat 2696742  T
Q  454 ttctagta-ggggtgtttcat 473  Q
    |||||||| ||||||||||||    
T  2696743 ttctagtagggggtgtttcat 2696763  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 128 - 469
Target Start/End: Original strand, 31347352 - 31347698
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||  |||||||||| |||||||| || |||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||||| |    
T  31347352 gtataaacccgaaatgggttgtgtttagaa-catatggcgatcctaggttctctgagattgcctacaacctaggataggtggaactcactgagacatcct 31347450  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagta 324  Q
    ||||| ||||||||| ||||| ||||||||||||| ||||||| || | || |  ||||||||| ||||||||| || |   ||| |||||||||||||     
T  31347451 gtctcaccccaatcctttttacttatttcagatattcaagttactagatgacacaatggttcgtgatgaagaagcagaagtcgctggaccatataaagtt 31347550  T
Q  325 cacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcaga-gaatatttatttattgtaattttaatgtatccaacgccaagt 423  Q
    ||||| ||||| | |||||| ||| ||  |  |||||| ||| ||   || |||||| |||  |||  ||||| |||||||||||||||||| ||||| |    
T  31347551 cacgtcagtggtattatttcagagttataagacgagaacttccatatcttattcagaggaagttttgattattctaattttaatgtatccaatgccaact 31347650  T
Q  424 ttaacacacatgctagat--atcctaggtgatttctagtaggggtgtt 469  Q
    |||||||| |||||||||  ||||||||| ||||||||||||||||||    
T  31347651 ttaacacaaatgctagataaatcctaggtaatttctagtaggggtgtt 31347698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 31314761 - 31314590
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||| |||||| ||||| |||||| || |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |    
T  31314761 gtataaacctgaaatgg-ttgagattagaa-cagatggcgatcctaggttccctgagattgcctacaacctaggataggtggaactcactgaaacatcat 31314664  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    ||||| |||| ||| |||||||||||||||||||| || |||| ||||||| |  ||||||||| |||||||||    
T  31314663 gtctcaccccgatctcttttatttatttcagatattcaggttactatacgacatcatggttcgtgatgaagaag 31314590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 31314491 - 31314412
Alignment:
Q  395 ttgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcata 474  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||    
T  31314491 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgttacata 31314412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 29747238 - 29747145
Alignment:
Q  153 tagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttt 246  Q
    |||| ||| ||||||||| ||| ||||||||| | ||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  29747238 tagagacagatggtgatcatagattccccgagatcgcctacaacctaggatatgtggaactcactgagacatcctgtctcaccccaatcccttt 29747145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 38211432 - 38211334
Alignment:
Q  162 atggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagat 260  Q
    |||| |||| |||| ||||| || ||||||||||| |||||||||||||||||||||| | ||| |||||| ||||||||| |||  ||||||||||||    
T  38211432 atggcgatcataggctccccaagattgcctacaacttaggataggtggaactcactgagagatcctgtctcaccccaatccttttattttatttcagat 38211334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 18010977 - 18010896
Alignment:
Q  180 ccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    ||||| |||||| || |||||||||||||||||||||||| ||||| |||||| |||||||||||||  || ||||||||||    
T  18010977 ccgagattgcctgcagcctaggataggtggaactcactgagacatcctgtctcaccccaatccctttatttcatttcagata 18010896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 17863308 - 17863231
Alignment:
Q  167 gatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatccct 244  Q
    |||| ||||||||||||| |||| || ||||||| |||||||||||||||||| ||||| |||||| ||||| |||||    
T  17863308 gatcataggttccccgagattgcatataacctagaataggtggaactcactgagacatcatgtctcaccccagtccct 17863231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 33125412 - 33125485
Alignment:
Q  188 gcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    |||||||  ||||||||||||||||||||| | ||||| |||||| |||||||||||||  ||||||| |||||    
T  33125412 gcctacagtctaggataggtggaactcactaagacatcatgtctcaccccaatccctttattttattttagata 33125485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 29742372 - 29742309
Alignment:
Q  156 aaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactga 219  Q
    ||||| |||| |||| ||||||||| ||| ||||||||||||||  ||||||||||||||||||    
T  29742372 aaacagatggcgatcataggttccctgagattgcctacaacctaaaataggtggaactcactga 29742309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 24837287 - 24837195
Alignment:
Q  162 atggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    |||| |||| |||||||||| || || | |||| |||| |||||| ||||||||||||  |||| |||||| || ||||||| |||||||||||    
T  24837287 atggcgatcataggttccccaagatttcttacatcctaagataggcggaactcactgagccatcatgtctcacctcaatccc-tttatttattt 24837195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 33119191 - 33119240
Alignment:
Q  197 ctaggataggtggaactcactgatacatcttgtctctccccaatcccttt 246  Q
    |||||||| |||||||||||| | ||||| |||||| |||||||||||||    
T  33119191 ctaggataagtggaactcactaagacatcatgtctcaccccaatcccttt 33119240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 94 - 298
Target Start/End: Complemental strand, 41528030 - 41527826
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||| || | |||| |||||||||||||||||| ||||||||    
T  41528030 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagcttagtaatagatggcgatcctaggttccccgagattgcctac 41527931  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||  ||||||||||||||| | | |||||||||| |    
T  41527930 agcctaggataggtggaactcactgagacattttgtctcaccccaattctttttatttatttcagacgtacaagttattatacaacatgatggttcgtga 41527831  T
Q  294 tgaag 298  Q
    |||||    
T  41527830 tgaag 41527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 128 - 251
Target Start/End: Original strand, 26075607 - 26075730
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||| | || |||||||||||||||||||||||  |||||||||||| ||||| ||||||||||| |||||| ||||||||||||||||||||| |    
T  26075607 gtataaacttgaattgggttgagtttagaaacaaatgacgatcctaggttctccgagattgcctacaacataggattggtggaactcactgatacatcct 26075706  T
Q  228 gtctctccccaatcccttttattt 251  Q
    ||||| ||||||||||||||||||    
T  26075707 gtctcaccccaatcccttttattt 26075730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 41527722 - 41527650
Alignment:
Q  397 gtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  41527722 gtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 41527650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 22301971 - 22301875
Alignment:
Q  158 acaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    |||||||| |||| |||||||||||   ||||||||||| |||||||||||||||||||| | ||||| ||||||  |||||| ||||||||||||||    
T  22301971 acaaatggcgatcataggttccccgcaattgcctacaacttaggataggtggaactcactaagacatcatgtctcatcccaat-ccttttatttattt 22301875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 37456209 - 37456279
Alignment:
Q  194 aacctaggataggt-ggaactcactgatacatcttgtctctcccc-aatcccttttatttatttcagatat 262  Q
    |||||||||||||| |||||||||||| |||||||||||| |||| |||||| ||||||| ||||||||||    
T  37456209 aacctaggataggttggaactcactgagacatcttgtctcaccccaaatcccctttatttttttcagatat 37456279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 21099044 - 21098948
Alignment:
Q  158 acaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    |||||||| |||| ||| ||||||| | ||||| ||| |||||||||||||||||||||||| ||||  ||||||  | |||| ||||||||||||||    
T  21099044 acaaatggcgatcatagattccccgcgattgcccacagcctaggataggtggaactcactgaaacattctgtctcatctcaat-ccttttatttattt 21098948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 41528205 - 41528128
Alignment:
Q  11 cagagacatacgtagataagtatgtcaaagtataagctatcccagaatacg-atatattggacatatgtttataatta 87  Q
    |||||||||||  ||||||||||||||||||| ||||||| | |||||||| ||||||||||  ||||||||| ||||    
T  41528205 cagagacatactcagataagtatgtcaaagtaaaagctatactagaatacgaatatattggatttatgtttatgatta 41528128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 23213730 - 23213657
Alignment:
Q  143 gggttgagtttagaaacaaatggtgatcctaggtt-ccccgaggttgcctacaacctaggataggtggaactcact 217  Q
    ||||||||||||||  || |||| |||| |||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  23213730 gggttgagtttaga--cagatggcgatcataggtttccccgagattgcctaaaacctaggataggtggaactcact 23213657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 19210009 - 19209916
Alignment:
Q  175 gttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagtt 269  Q
    |||| ||||| || |||||||||||| ||||||| |||||||||| |||||| |||||  || ||||||||   ||||||||| ||| |||||||    
T  19210009 gttctccgagattacctacaacctagaataggtgaaactcactgagacatctcgtctc-accaaatcccttgattttatttcacataaacaagtt 19209916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 37456413 - 37456464
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcc 445  Q
    ||||| |||||||||||||||||| ||||||||||  || ||||||||||||||    
T  37456413 ttattataattttaatgtatccaatgccaagttta--actcatgctagatatcc 37456464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 28739613 - 28739557
Alignment:
Q  198 taggataggtggaactcactgatacatcttgtctctccccaatcccttttatttattt 255  Q
    |||||||||| ||||||||||| |||||| |||||  |||||| ||||||||||||||    
T  28739613 taggataggttgaactcactgagacatctcgtctcatcccaat-ccttttatttattt 28739557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 94 - 301
Target Start/End: Original strand, 14521581 - 14521788
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||| |||| |||| ||| ||||||||| ||||||||    
T  14521581 atcccctgatagctcagttatgcataatgaaatcatataaacccgaaatgggttgagtttagtaacagatggcgatcttagattccccgagattgcctac 14521680  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||| | |||| ||||||| ||||||||| ||||||||||||||||  ||||||||||||||| | | |||||||||| |    
T  14521681 agcctaggataggtggaactcactaagacattttgtctcaccccaatcctttttatttatttcagacgtacaagttattatacaacatgatggttcgtga 14521780  T
Q  294 tgaagaag 301  Q
    ||||||||    
T  14521781 tgaagaag 14521788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 19359802 - 19360005
Alignment:
Q  94 atcctctgatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctac 193  Q
    |||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||| || | |||| |||||||||||||||||| ||||||||    
T  19359802 atcccctgatcgctcagttatgcataatgaaatcatataaacccgaaatgggttgagcttagtaatagatggcgatcctaggttccccgagattgcctac 19359901  T
Q  194 aacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaa 293  Q
    | |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||  ||||||||||||||| | | |||||||||| |    
T  19359902 agcctaggataggtggaactcactgagacattttgtctcaccccaattctttttatttatttcagacgtacaagttattatacaacatgatggttcgtga 19360001  T
Q  294 tgaa 297  Q
    ||||    
T  19360002 tgaa 19360005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 128 - 472
Target Start/End: Complemental strand, 5835393 - 5835055
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    ||||||||| |||||||||||||||||||| || |||  |||||||||||||| ||| ||||||| | |||||||||||||||||||||||| ||||| |    
T  5835393 gtataaacccaaaatgggttgagtttagaa-catatgacgatcctaggttccctgagattgcctatagcctaggataggtggaactcactgagacatcct 5835295  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagta 324  Q
     |||| ||||||||||||||||||||||||||||| |||||||       | || ||||||||| ||||||||| || |   ||| || ||||||||||     
T  5835294 atctcaccccaatcccttttatttatttcagatattcaagtta-------acagaatggttcgtgatgaagaagcagaagtcgctagatcatataaagtt 5835202  T
Q  325 cacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagt 423  Q
    ||||| ||||| | |||||| ||||||  |   ||||| ||| || || | ||||||| | |||| | |||| ||||||||||||||||||| |||||||    
T  5835201 cacgtaagtggtattatttcagaggtataaaatgagaatttctat-atct-ttcagaggaaatttttattatggtaattttaatgtatccaatgccaagt 5835104  T
Q  424 ttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    |||| || ||||||||||||||||||| |||| ||||||||||||||||    
T  5835103 ttaatactcatgctagatatcctaggtaatttatagtaggggtgtttca 5835055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 99 - 469
Target Start/End: Original strand, 2747012 - 2747387
Alignment:
Q  99 ctgatcgctcagttatgcataatgaaatc-gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacc 197  Q
    ||||||||||||||||| || || ||  | |||||||||  |||||||||||| ||| ||||| |||| |||||||||||||| ||| ||||||||||||    
T  2747012 ctgatcgctcagttatgtatgataaagactgtataaacccgaaatgggttgagatta-aaacatatggcgatcctaggttccctgagattgcctacaacc 2747110  T
Q  198 taggataggtggaactcactgatacatcttgtctctccccaatcccttttattta-tttcagatatacaagttattatacgataggatggttcgtaatga 296  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||||||||| || |||| || |||| || |  |||||| ||||    
T  2747111 taggataggtggaactcactgagacatcctgtctcaccccaatcccttttatttattttcagatattcaggttactagacgacagaactgttcgtgatga 2747210  T
Q  297 agaagtagca---gcttgaccatataaagtacacgttagtggaactatttctgaggtaacacgcgagaaattcaatgatttgttcagagaatatttat-t 392  Q
    ||||| || |   ||| ||||||||||||| || || | ||| | || | | ||||||  |  || ||| | | ||   || | ||||| | |||| |      
T  2747211 agaagcagaagtcgctggaccatataaagttcatgtcaatggtattactccagaggtataagacgggaattaccatatcttatccagaggaaatttttac 2747310  T
Q  393 tattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  2747311 tattgtaattttaatgtatccaatgccaagtttaacatacattctagatatcctaggtaatttctagtaggggtgtt 2747387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 18111208 - 18111036
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||| |||||||||||| |||||| || |||| |||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||| |    
T  18111208 gtataaacctgaaatgggttgagattagaa-cagatggcgatcctaggttccctgatattgcctacaacctaggataggtggaactcactgagacatcat 18111110  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaag 301  Q
    ||||| |||| |||||||||||||||||||||||| || |||| ||||||| |  ||||||||| |||||||||    
T  18111109 gtctcaccccgatcccttttatttatttcagatattcaggttactatacgacatcatggttcgtgatgaagaag 18111036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 139 - 469
Target Start/End: Complemental strand, 28034444 - 28034112
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    ||||||||||||||||||| || |||| |||||||||||||  ||| ||||| |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  28034444 aaatgggttgagtttagaa-catatggcgatcctaggttccttgagattgccaacaacctaggataggtggaattcactgagacatcttgtctcacccca 28034346  T
Q  239 atcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagtacacgttagtgg 335  Q
    |||||||||||||||||||||||| || |||| || |||| |  ||||||| | ||||||||| || |   ||| ||||||| ||||| ||| | |||||    
T  28034345 atcccttttatttatttcagatattcaggttactagacgacataatggttcatgatgaagaagcagaagtcgctggaccatacaaagttcacatcagtgg 28034246  T
Q  336 aactatttctgaggtaacacgcgagaaa-ttcaatgatttgttcagagaatatttat-ttattgtaattttaatgtatccaacgccaagtttaacacaca 433  Q
       |||| | ||| ||      || ||| ||| || || | |||||||||| ||| | |||||||||||||||||||||||| ||||| |||||||||||    
T  28034245 tgttattgcagagatatatgaagaaaaatttctat-atct-ttcagagaatttttttattattgtaattttaatgtatccaatgccaattttaacacaca 28034148  T
Q  434 tgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||| ||  ||||||||||||||||||    
T  28034147 tgctagatatccttggaaatttctagtaggggtgtt 28034112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 37489458 - 37489358
Alignment:
Q  162 atggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagata 261  Q
    |||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  37489458 atggcgatcctaggtttcctgagattgcctacaacctaggataggtggaactcaccgagacatcttgtctcaccccaatcccttttatttatttcagata 37489359  T
Q  262 t 262  Q
    |    
T  37489358 t 37489358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 19440821 - 19440699
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    |||||||||||||||| ||| | |||| |||||||||||||  ||| ||||||||| |||||||||||||||||||||||| ||||| |||||| || ||    
T  19440821 aaatgggttgagtttaaaaa-agatggcgatcctaggttccttgagattgcctacagcctaggataggtggaactcactgagacatcatgtctcacctca 19440723  T
Q  239 atcccttttatttatttcagatat 262  Q
    ||||||||||||||||||||||||    
T  19440722 atcccttttatttatttcagatat 19440699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 5938502 - 5938361
Alignment:
Q  128 gtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatctt 227  Q
    |||||||||| ||||||||||||||||||| || |||| |||||||  ||||| ||  ||||||| | |||||||||||||||||||||||| ||||| |    
T  5938502 gtataaacctgaaatgggttgagtttagaa-catatggcgatcctaatttccctgaaattgcctatagcctaggataggtggaactcactgagacatcct 5938404  T
Q  228 gtctctccccaatcccttttatttatttcagatatacaagtta 270  Q
     |||| |||||||||||||||||| |||||||||| |||||||    
T  5938403 atctcaccccaatcccttttatttgtttcagatattcaagtta 5938361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 14521885 - 14521959
Alignment:
Q  395 ttgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  14521885 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 14521959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 472
Target Start/End: Complemental strand, 19440579 - 19440499
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttca 472  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||    
T  19440579 ttattgtaattttaatgtacccaatgccaagtttaacacacacgctagatatcctaggtaatttctagcagggatgtttca 19440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 37489222 - 37489146
Alignment:
Q  393 tattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | || |||||||||||||    
T  37489222 tattgtaattttaatgtatccaatgccaagtttaacacacatgctagatatcctaggaaaattttagtaggggtgtt 37489146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 399 - 469
Target Start/End: Complemental strand, 18110933 - 18110863
Alignment:
Q  399 aattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  18110933 aattttaatgtatccattgccaagtttaacactcatgctagatatcctaggaaatttctagtaggggtgtt 18110863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 14521402 - 14521483
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  14521402 agaatcagagacatacccagataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 14521483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 19360112 - 19360184
Alignment:
Q  397 gtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||| || || ||||||||||||||||||    
T  19360112 gtaattttaatgtatccattgccaagtttaacactcatgctagatatcgtatgtaatttctagtaggggtgtt 19360184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 7782923 - 7782837
Alignment:
Q  156 aaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcc 242  Q
    ||||||||||||||| ||||||||||||| ||||||| | | |||||||||||||||||||| | ||||| |||||| ||| |||||    
T  7782923 aaacaaatggtgatcataggttccccgagattgcctatagcttaggataggtggaactcactaagacatcgtgtctcaccctaatcc 7782837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 11418252 - 11418187
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttct 457  Q
    |||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||| ||||||    
T  11418252 ttattgtaattttaatgtatgcaatgccaagtttaacgcacgtgctagatatcctaggtaatttct 11418187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 27170209 - 27170130
Alignment:
Q  162 atggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatc 241  Q
    ||||||||| ||||||||  ||| |||||| ||||||| ||||| ||||||||||||| ||||| |||||| || |||||    
T  27170209 atggtgatcataggttcctagagattgccttcaacctatgatagatggaactcactgagacatcatgtctcacctcaatc 27170130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 139 - 478
Target Start/End: Original strand, 45168 - 45508
Alignment:
Q  139 aaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctcccca 238  Q
    |||||||||||||||||||| |  |||  ||||||||| ||| ||| |||||||||||||||| || |||||||||||| | |||| ||||||| |||||    
T  45168 aaatgggttgagtttagaaa-aggtggcaatcctaggt-ccctgagattgcctacaacctagggtatgtggaactcactaagacattttgtctcacccca 45265  T
Q  239 atcccttttatttatttcagatatacaagttattatacgataggatggttcgtaatgaagaagtagca---gcttgaccatataaagtacacgttagtgg 335  Q
    |||||||||||||||||||||||| || |||| || |||| || ||||||||| ||||||||| || |   ||| |||||| |||||| ||| | |||||    
T  45266 atcccttttatttatttcagatattcaggttactagacgacagaatggttcgtgatgaagaagcagaagttgctggaccatttaaagttcacatgagtgg 45365  T
Q  336 aactatttctgaggtaacacgcgagaaattcaatgatttgttcagag--aatatttatttattgtaattttaatgtatccaacgccaagtttaacacaca 433  Q
     | |||||| ||||||  |  | | || ||| ||   || |||||||  |||||||| |||||| ||||||||||||  ||| | |||||||||||||||    
T  45366 tattatttcagaggtataatacaaaaatttctatatcttattcagaggaaatattta-ttattgaaattttaatgtactcaatgtcaagtttaacacaca 45464  T
Q  434 tgctagatatcctaggtgatttctagtaggggtgtttcatattcc 478  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    
T  45465 tgctagatatcctaggtaatttctagta-gggtgtttcatattcc 45508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 105 - 301
Target Start/End: Original strand, 37390 - 37588
Alignment:
Q  105 gctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggata 204  Q
    |||||||| |||||||| ||||| ||||||||  ||||||||||||||||| |||| |||| |||  ||||||||||||| ||| ||||| |||||||||    
T  37390 gctcagttttgcataataaaatcatataaacccgaaatgggttgagtttagtaacagatggcgattgtaggttccccgagattgtctacagcctaggata 37489  T
Q  205 ggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagt--tattatacgataggatggttcgtaatgaagaag 301  Q
    ||||||||| | ||| |||| ||||||| ||| ||| | ||||||||||||||||| |||||||  |||||||| | | |||||||||| |||||||||    
T  37490 ggtggaactaaatgagacattttgtctcaccctaattctttttatttatttcagatgtacaagttatattatacaacatgatggttcgtgatgaagaag 37588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 172 - 301
Target Start/End: Original strand, 1 - 132
Alignment:
Q  172 taggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtctctccccaatcccttttatttatttcagatatacaagt--t 269  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||| |||||||  |    
T  1 taggttccccgagattgcctacagcctaggataggtggaactcactgagacattttgtctcaccccaatcctttttatttatttcagatgtacaagttat 100  T
Q  270 attatacgataggatggttcgtaatgaagaag 301  Q
    ||||||| | | |||||||||| |||||||||    
T  101 attatacaacatgatggttcgtgatgaagaag 132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 230 - 304
Alignment:
Q  395 ttgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  230 ttgtaattttaatgtatccattgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgtt 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 475
Target Start/End: Original strand, 37687 - 37767
Alignment:
Q  395 ttgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtttcatat 475  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  37687 ttgtcattttaatgtatccactgccaagtttaacactcatgctagatatcctaggtaatttctagtaggggtgttacatat 37767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 37198 - 37279
Alignment:
Q  6 agaagcagagacatacgtagataagtatgtcaaagtataagctatcccagaatacgatatattggacatatgtttataatta 87  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||    
T  37198 agaatcagagacatacttagataagtatgtcaaagtataagctatactagaatacgatatattggatttatgtttatgatta 37279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 63613 - 63452
Alignment:
Q  101 gatcgctcagttatgcataatgaaatcgtataaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctag 200  Q
    |||||||||||||||||||||||||  ||||| |||  ||||||||||||||||| |||| | |  |||| ||||||||||||| | || |||||| |||    
T  63613 gatcgctcagttatgcataatgaaactgtatatacccgaaatgggttgagtttagtaacagacgacgatcgtaggttccccgagatagcatacaacttag 63514  T
Q  201 gataggtggaactcactgatacatcttgtctctccccaatccctttta-tttatttcagata 261  Q
    ||||||||||||||||||| ||||| |||| | |||||||| |||||| |||||||||||||    
T  63513 gataggtggaactcactgagacatcctgtcacaccccaatctcttttattttatttcagata 63452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 70098 - 70221
Alignment:
Q  131 taaacctaaaatgggttgagtttagaaacaaatggtgatcctaggttccccgaggttgcctacaacctaggataggtggaactcactgatacatcttgtc 230  Q
    |||||| |||||||||||||||||||| || ||| ||||||||||| ||| ||| |||||| || |||||||||||||||||||||||| ||||||||||    
T  70098 taaacccaaaatgggttgagtttagaa-cagatgttgatcctaggtaccctgagattgcctgcatcctaggataggtggaactcactgagacatcttgtc 70196  T
Q  231 tctccccaatcccttttatttattt 255  Q
    || ||| ||||||||||||||||||    
T  70197 tcacccgaatcccttttatttattt 70221  T

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Target: scaffold0043; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 70367 - 70444
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacacatgctagatatcctaggtgatttctagtaggggtgtt 469  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  || |||||||||||||||    
T  70367 ttattgtaattttaatgtattcaatgccaagtttaacacacatgctagatatcctaggaaatgtctagtaggggtgtt 70444  T

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Target: scaffold0018 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 392 - 473
Target Start/End: Original strand, 66229 - 66311
Alignment:
Q  392 ttattgtaattttaatgtatccaacgccaagtttaacacac-atgctagatatcctaggtgatttctagtaggggtgtttcat 473  Q
    ||||||||||||||| ||| |||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  66229 ttattgtaattttaacgtacccaatgccaagtttaacacaccatgctagatattctaggtaatttctagtaggggtgtttcat 66311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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