View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9253_low_2 (Length: 612)
Name: NF9253_low_2
Description: NF9253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9253_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 44243198 - 44242611
Alignment:
| Q |
19 |
aagtaaaattagagagttcaaaacctaccaagaaaatgacgttgagaatgaaaggagcatggatgatactaggttcggattcaaagcattaactgaatgt |
118 |
Q |
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| T |
44243198 |
aagtaaaattagagagttcaaaacctaccaagaaaatgacgttgagaatgaaaggagcatggatgatactaggttcggattcaaagcattaactgaatgt |
44243099 |
T |
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| Q |
119 |
tgaaagttcagtacgggcataaaatgtatgaattacgcagatgtctagttcaacagtgttgtgtctgagcccttaaaatcttgatgttgggtttgaaact |
218 |
Q |
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| T |
44243098 |
tgaaagttcagtacgggcataaaatgtatgaattacgcagatgtctagttcaacagtgttgtgtctgagcccttaaaatcttgatgttgggtttgaaact |
44242999 |
T |
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| Q |
219 |
ttgaactcatgctgccccactatgagtgttttttatccccaaaatcccgttggccaattgacattgagaaatgagaaccagcttctggaaggaatatctt |
318 |
Q |
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| T |
44242998 |
ttgaactcatgctgccccactatgagtgttttttatccccaaaatcccgttggccaattgacattgagaaatgagaaccagcttctggaaggaatatctt |
44242899 |
T |
|
| Q |
319 |
gtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatcaaacgtcactgt-----tatggcttgaatatttaaggtttaatca |
413 |
Q |
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| T |
44242898 |
gtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatcaaacgtcactgttatgttatggcttgaatatttaaggtttaatca |
44242799 |
T |
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| Q |
414 |
cnnnnnnnaaaacatttgagtaattcaagggattgtgataatgatgatgacacggacccagagtgaaggttcttccttattaatgtcggtaagggacaga |
513 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44242798 |
ctttttttaaaacatttgagtaattcaagggattgtgataatgatgatgacacggacccagagtgaaggttcttccttattaatgtcggtaagggacaga |
44242699 |
T |
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| Q |
514 |
gattttggtaaaagcaaggtaccctacacttatctcatccgaaagtagtgcaaatatgaaaaaagaaaaggacaagttctgtgctgct |
601 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44242698 |
gattttggtaaaagcaaggtaccctacacttacctcatccgaaagtagtgcaaatatgaaaaaagaaaaggacaagttctgtgttgct |
44242611 |
T |
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