View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9253_low_3 (Length: 585)
Name: NF9253_low_3
Description: NF9253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9253_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 245 - 571
Target Start/End: Complemental strand, 42929654 - 42929328
Alignment:
| Q |
245 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaag |
344 |
Q |
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| T |
42929654 |
caaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaag |
42929555 |
T |
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| Q |
345 |
accttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacacta |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929554 |
accttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatctcgagattccatagataaaactacacta |
42929455 |
T |
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| Q |
445 |
tctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaaaatggagttggtctcatctggctcaaagaaaaacc |
544 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42929454 |
tctttgaatggcaagctttgagtttcaccacctccaattgcagcagctttattattaacctctaagatggagttggtctcatctggctcaaagaaaaacc |
42929355 |
T |
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| Q |
545 |
gatcagaagataatccacgaatcacag |
571 |
Q |
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| T |
42929354 |
gatcagaagataatccacgaatcacag |
42929328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 42929879 - 42929751
Alignment:
| Q |
20 |
gagtttgtgaagcttcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929879 |
gagtttgtgaagcttcaacttcatcttcacaatcaatctcctccctaacttgttctaacaacaaagaagaactaggagtatcaacctcttcctcgcgagc |
42929780 |
T |
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| Q |
120 |
ttccgaacaagaaacacaacgagtgctat |
148 |
Q |
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| T |
42929779 |
ttccgaacaagaaacacaacgagtgctat |
42929751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 50463289 - 50463383
Alignment:
| Q |
265 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
359 |
Q |
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|||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
262 |
aataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
337 |
Q |
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|||||||||| ||||||| ||| |||| | |||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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