View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9253_low_5 (Length: 567)

Name: NF9253_low_5
Description: NF9253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9253_low_5
NF9253_low_5
[»] chr4 (6 HSPs)
chr4 (190-549)||(29339503-29339862)
chr4 (315-549)||(29352665-29352899)
chr4 (18-127)||(29339922-29340031)
chr4 (125-180)||(26413981-26414036)
chr4 (140-180)||(20959998-20960038)
chr4 (125-160)||(29339864-29339899)
[»] chr1 (5 HSPs)
chr1 (304-547)||(44662555-44662791)
chr1 (302-425)||(44684969-44685092)
chr1 (139-180)||(52909502-52909543)
chr1 (137-180)||(40608988-40609031)
chr1 (138-179)||(2537552-2537593)
[»] scaffold0024 (1 HSPs)
scaffold0024 (125-180)||(121086-121141)
[»] chr8 (2 HSPs)
chr8 (125-171)||(43933683-43933729)
chr8 (127-169)||(15699339-15699381)
[»] chr6 (1 HSPs)
chr6 (125-180)||(9871651-9871707)
[»] chr3 (3 HSPs)
chr3 (125-180)||(14753812-14753867)
chr3 (125-171)||(52011992-52012038)
chr3 (139-171)||(40458145-40458177)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 190 - 549
Target Start/End: Complemental strand, 29339862 - 29339503
Alignment:
Q  190 atttaagtaaggttcgcataagttaatttagtcgatctatataataaatatcaatcaacaattgagtgaatcgaaaagtttgtactttctagtacaatat 289  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  29339862 atttaagtgaggttcgcataagttaatttagtcgatctatataataaatatcaatcaacaattgagtgaatcgaaaagtttgtactttctagtactgtat 29339763  T
Q  290 tttgttatattaaatatctaaagatagaaaaataaagcatctaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaat 389  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29339762 tttgtcatattaaatatctaaagatagaaaaatcaagcatcaaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaat 29339663  T
Q  390 tactgcatctaaattggcatctgtttcaccaatgcattgtgtgatagcaaggttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctct 489  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29339662 tactgcatctaaattggcatcagtttcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctct 29339563  T
Q  490 tcttctgagagtttggcattgccaacaactgttggcaacatctctgtatcaggaatgata 549  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29339562 tctcctgagagtttggcattgccaacaactgttggcaacatctctgcatcaggaatgata 29339503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 315 - 549
Target Start/End: Complemental strand, 29352899 - 29352665
Alignment:
Q  315 agaaaaataaagcatctaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaaattggcatctgtt 414  Q
    |||||||| ||||||| |||||| ||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  29352899 agaaaaatcaagcatcaaaaacctacctaagttacacaagttgtatttgtttatagtctccacatagtgagcaattactgcatctaaattggcatcagtt 29352800  T
Q  415 tcaccaatgcattgtgtgatagcaaggttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctcttcttctgagagtttggcattgccaa 514  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29352799 tcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctcttcttctgagagtttggcaatgccaa 29352700  T
Q  515 caactgttggcaacatctctgtatcaggaatgata 549  Q
    ||||||||||||||||||||| |||||||||||||    
T  29352699 caactgttggcaacatctctgcatcaggaatgata 29352665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 29340031 - 29339922
Alignment:
Q  18 gatttgtgggataacctttggtataattacgtcaaagttagtattgatttagttatagagatagatagatatgtgagcaacagtgtcaacaacaaattct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  29340031 gatttgtgggataacctttggtataattacgtcaaagttagtattgatttagttatagagataaatagatatgggagcaacagtgtcaacaacaaattct 29339932  T
Q  118 ttaatatact 127  Q
    ||||||||||    
T  29339931 ttaatatact 29339922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 26413981 - 26414036
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  26413981 actagagtttataattgtttaggtcatgccttgagaatgctctcaagaggggtatt 26414036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 20959998 - 20960038
Alignment:
Q  140 tgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  20959998 tgtttaggtcatgccttgagaatgctctcaagaggggtatt 20960038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 29339899 - 29339864
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgaga 160  Q
    |||||||||||||||||||||||||||||| |||||    
T  29339899 actagggtttataactgtttaggtcatgccatgaga 29339864  T

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Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 304 - 547
Target Start/End: Original strand, 44662555 - 44662791
Alignment:
Q  304 tatctaaagatagaaaaata--aagcatctaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaa 401  Q
    ||||||||||||||||||||  ||||| | ||| || ||||||||| |||| |||||||||| |||||||||   ||||||||| ||||| |||||| ||    
T  44662555 tatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacttggttatagtctgagcatagtgagcaattattgcatccaa 44662654  T
Q  402 attggcatctgtttcaccaatgcattgtgtgatagcaaggttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctcttcttctgagagt 501  Q
    |||||||||||||||||| ||| | |  |||| | ||||||| ||||||| | |||||| ||||||||         ||||| ||||||||  |||||||    
T  44662655 attggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcat---------catgtttctcttctcttgagagt 44662745  T
Q  502 ttggcattgccaacaactgttggcaacatctctgtatcaggaatga 547  Q
    ||||||||| | ||||| ||||||||||  |||| |||||||||||    
T  44662746 ttggcattgactacaaccgttggcaacaattctgcatcaggaatga 44662791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 44684969 - 44685092
Alignment:
Q  302 aatatctaaagatagaaaaataaagcatctaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaa 401  Q
    |||| ||||| |||||||||| ||||| | ||| || ||||||||| || |||||||||||||||||||||||| ||||| ||| ||||| |||||| ||    
T  44684969 aataactaaatatagaaaaatgaagcaccaaaaccctacctaagttacgtaagttgtacttgtttatagtctccgcatagcgagcaattattgcatccaa 44685068  T
Q  402 attggcatctgtttcaccaatgca 425  Q
    |||||||||| |||| || |||||    
T  44685069 attggcatctttttcgcccatgca 44685092  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 52909502 - 52909543
Alignment:
Q  139 ctgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  52909502 ctgtttaggtcatgccttgagaatgctctcaagaggggtatt 52909543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 40609031 - 40608988
Alignment:
Q  137 aactgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||    
T  40609031 aactgtttaggtcatggtttgagaatgttctcaagaggggtatt 40608988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 2537552 - 2537593
Alignment:
Q  138 actgtttaggtcatgccttgagaatgttctcaagagaggtat 179  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  2537552 actgtttagatcatgccttgagaatgctctcaagaggggtat 2537593  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 121141 - 121086
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| ||| ||||||    
T  121141 actagggtttagaactgtgtaggtcatgccttgagaatgatctcatgaggggtatt 121086  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 43933729 - 43933683
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgagaatgttctcaag 171  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||    
T  43933729 actagggtttgtatctgtttaggtcatgccttgagaatgctctcaag 43933683  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 15699339 - 15699381
Alignment:
Q  127 tagggtttataactgtttaggtcatgccttgagaatgttctca 169  Q
    ||||||||| |||| |||||||||||||||||||||| |||||    
T  15699339 tagggtttagaactatttaggtcatgccttgagaatgctctca 15699381  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 9871651 - 9871707
Alignment:
Q  125 actagggtttataa-ctgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    |||||||||| ||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  9871651 actagggtttttaatctgtttaggtcatgccttgagaatactctcaagaggggtatt 9871707  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 14753867 - 14753812
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgagaatgttctcaagagaggtatt 180  Q
    ||||||||||| ||||| |||||| || ||||||||||| ||||||||| ||||||    
T  14753867 actagggtttagaactgcttaggtgataccttgagaatgctctcaagaggggtatt 14753812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 52011992 - 52012038
Alignment:
Q  125 actagggtttataactgtttaggtcatgccttgagaatgttctcaag 171  Q
    ||||||||| |||  |||||||||||||||||||||||| |||||||    
T  52011992 actagggttaatatttgtttaggtcatgccttgagaatgatctcaag 52012038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 40458177 - 40458145
Alignment:
Q  139 ctgtttaggtcatgccttgagaatgttctcaag 171  Q
    ||||||||||||||||||||||||| |||||||    
T  40458177 ctgtttaggtcatgccttgagaatgatctcaag 40458145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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