View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9253_low_6 (Length: 549)
Name: NF9253_low_6
Description: NF9253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9253_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 4 - 533
Target Start/End: Original strand, 13714169 - 13714698
Alignment:
| Q |
4 |
atctccctctcacaactatgtggaggtaatcaatccaaactactgatagtttgaaactgttctcttggtagtgttttagtcatcatattatagccattat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13714169 |
atctccctctcacaactatgtggaggtaatcaatccaaactagtgatagtttcaaacttttctcttggtagtgttttagtcatcatattatagccattat |
13714268 |
T |
|
| Q |
104 |
tatcagtatgaactttagctaactctaacaacatagcatctataacgccatgtgttcaatcatatctcgaatcaatgtgtttgaacctattacaagaagt |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13714269 |
tatcagtatgaaatttagctaactctaacaacatagcatctataacgccatgtattcaatcatatctcgaatcaatgtgtttgaacctattacaaaaagt |
13714368 |
T |
|
| Q |
204 |
tggattctcaccaagatgaatagcactttgactattagcaaatatttgttcttcacccttgggagttgaactttcaatggagatgggtaatgagctaata |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13714369 |
tggattcttaccaagatgaatagcactttgactattaacaaatatttgttcttcacccttgggagttgaactttcaatggagatgggtaatgagctaata |
13714468 |
T |
|
| Q |
304 |
ggtctagcccttagtgcgggtttttagactactccaaagaacgtctagtatagaaggatgaactagtacataagaagacataaaactaaagtagaggaaa |
403 |
Q |
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||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13714469 |
ggtctagcccttagtgcgggtttctagactacttcaaaggacgtctagtatagaaggatgaactagtacttaagaagacataaaactaaagtagaggaaa |
13714568 |
T |
|
| Q |
404 |
gacaaaaagatggtttcttataaattggacctgtaaaaaagttggtccataatggacctannnnnnncatggttagattatagcactccaccaaaactta |
503 |
Q |
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| T |
13714569 |
gacaaaaagatggttccgtataaattggacctgtaaaaaagttggtccataatagacctattttttttatggttagattagagcactccaccaaaactta |
13714668 |
T |
|
| Q |
504 |
tcatgtcctatcaatattttaactcacatc |
533 |
Q |
| |
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|||||||| |||||||||||||| |||||| |
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| T |
13714669 |
tcatgtccaatcaatattttaacccacatc |
13714698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 422 - 533
Target Start/End: Complemental strand, 4849311 - 4849200
Alignment:
| Q |
422 |
tataaattggacctgtaaaaaagttggtccataatggacctannnnnnncatggttagattatagcactccaccaaaacttatcatgtcctatcaatatt |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
4849311 |
tataaattggacctgtaaaaaagttggtccataatggatctatttttttcatggtttgattatagcattccatcaaaatttatcatgtcctatcaatatt |
4849212 |
T |
|
| Q |
522 |
ttaactcacatc |
533 |
Q |
| |
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||||| |||||| |
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| T |
4849211 |
ttaacccacatc |
4849200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 422 - 533
Target Start/End: Original strand, 45907357 - 45907468
Alignment:
| Q |
422 |
tataaattggacctgtaaaaaagttggtccataatggacctannnnnnncatggttagattatagcactccaccaaaacttatcatgtcctatcaatatt |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
45907357 |
tataaattggacctgtaaaaaagttggtccataatagacctatttttttcatggttagattatagcactccaccaaaatttatcatgtcctataaatatt |
45907456 |
T |
|
| Q |
522 |
ttaactcacatc |
533 |
Q |
| |
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||||| |||||| |
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| T |
45907457 |
ttaacccacatc |
45907468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 429 - 531
Target Start/End: Complemental strand, 22918318 - 22918216
Alignment:
| Q |
429 |
tggacctgtaaaaaagttggtccataatggacctannnnnnncatggttagattatagcactccaccaaaacttatcatgtcctatcaatattttaactc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22918318 |
tggacctgtaaaaaagttggtccataatggacctatttttttcatggttagattttagcactccaccaaaacttatcatgtcctatcaatattttaaccc |
22918219 |
T |
|
| Q |
529 |
aca |
531 |
Q |
| |
|
||| |
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|
| T |
22918218 |
aca |
22918216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 4783753 - 4783848
Alignment:
| Q |
422 |
tataaattggacctgtaaaaaagttggtccataatggacctannnnnnncatggttagattatagcactccaccaaaacttatcatgtcctatcaa |
517 |
Q |
| |
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||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783753 |
tataaattggatctgtaaaaaagttggttcataatagacctatttttttcatggttagattatagcactccaccaaaacttatcatgtcctatcaa |
4783848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 1626890 - 1626810
Alignment:
| Q |
322 |
ggtttttagactactccaaagaacgtctagtatagaaggatgaactagtacataagaagacataaaactaaagtagaggaaag |
404 |
Q |
| |
|
||||| |||||||||||||| | |||||||| | |||| |||||||| ||||||| ||||| |||| ||||||| ||||||| |
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| T |
1626890 |
ggtttctagactactccaaaaagcgtctagtgtggaagcatgaactattacataaaaagac--aaaaataaagtaaaggaaag |
1626810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 6856818 - 6856753
Alignment:
| Q |
78 |
tttagtcatcatattatagccattattatcagtatgaactttagctaactctaacaacatagcatc |
143 |
Q |
| |
|
|||||||||||||| ||| | | ||| |||| |||||||||||| |||||| |||||| ||||||| |
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| T |
6856818 |
tttagtcatcatatcataactactataatcaatatgaactttagataactccaacaacttagcatc |
6856753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 9021116 - 9021048
Alignment:
| Q |
335 |
ctccaaagaacgtctagtatagaaggatgaactagtacataagaagacataaaactaaagtagaggaaa |
403 |
Q |
| |
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||||||||| | | |||||| ||||||||||||| || ||||||||||||||| |||| || |||||| |
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| T |
9021116 |
ctccaaagagcatttagtattgaaggatgaactattatctaagaagacataaaaataaaataaaggaaa |
9021048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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