View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9254_low_1 (Length: 365)
Name: NF9254_low_1
Description: NF9254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9254_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 112 - 350
Target Start/End: Original strand, 32823079 - 32823317
Alignment:
| Q |
112 |
ttggctatgtcaaattaaaattattgaaatttgaaactaaagattttagatggtataagtaggttagaaatacctgcatgtttgacagcttgatgaagtt |
211 |
Q |
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| T |
32823079 |
ttggctatgtcgaattaaaattattgaaatttgaaactaaagattttagatggtataagtaggttagaaatacctgcatgtttgacagcttgatgaagtt |
32823178 |
T |
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| Q |
212 |
caaggctttcagttttcataatctcaccacaatcaggacaagaacaaatggagcttcttagagaagagtctctagtgaaaccaagaacagggtcaacaac |
311 |
Q |
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| T |
32823179 |
caaggctttcagttttcataatctcaccacaatcaggacaagaacaaatggaacttcttagagaagagtctctagtgaaaccaagaacagggtcaacaac |
32823278 |
T |
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| Q |
312 |
cattcgacactcgtaacaaccggagagtctcctaaactg |
350 |
Q |
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| T |
32823279 |
cattcgacactcgtaacaaccggagagtctcctaaactg |
32823317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32823011 - 32823080
Alignment:
| Q |
14 |
aatggatactgatatcttaagaaattagttacctttggtgagataatgaatgtcattatctcgaggaatt |
83 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32823011 |
aatggatactggtatcttaagaaattagttacctttggtgagataatgaatgtcattatctcgaagaatt |
32823080 |
T |
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