View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9255_low_3 (Length: 282)

Name: NF9255_low_3
Description: NF9255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9255_low_3
NF9255_low_3
[»] chr6 (41 HSPs)
chr6 (19-269)||(28139386-28139636)
chr6 (48-269)||(26646353-26646574)
chr6 (48-269)||(26752321-26752542)
chr6 (40-269)||(28234430-28234659)
chr6 (46-269)||(28242676-28242899)
chr6 (81-268)||(31284195-31284382)
chr6 (81-250)||(26622883-26623052)
chr6 (81-250)||(26728861-26729030)
chr6 (28-269)||(27611094-27611335)
chr6 (18-269)||(27593112-27593363)
chr6 (18-269)||(27678790-27679041)
chr6 (40-269)||(26342026-26342255)
chr6 (87-268)||(26802355-26802536)
chr6 (40-269)||(27718471-27718700)
chr6 (40-269)||(28185232-28185461)
chr6 (81-269)||(27677706-27677894)
chr6 (87-269)||(27724937-27725119)
chr6 (40-269)||(28180980-28181209)
chr6 (92-269)||(28226868-28227045)
chr6 (25-269)||(27698586-27698830)
chr6 (51-205)||(26893627-26893781)
chr6 (48-269)||(26884037-26884258)
chr6 (48-259)||(28786152-28786363)
chr6 (48-259)||(28792273-28792484)
chr6 (75-269)||(27706494-27706688)
chr6 (84-269)||(28325391-28325576)
chr6 (87-268)||(28781052-28781233)
chr6 (48-268)||(26861490-26861710)
chr6 (40-269)||(26936960-26937189)
chr6 (213-269)||(26823879-26823935)
chr6 (87-235)||(27229145-27229293)
chr6 (213-269)||(27604797-27604853)
chr6 (213-268)||(25507002-25507057)
chr6 (142-244)||(2184866-2184968)
chr6 (148-238)||(28149912-28150001)
chr6 (159-269)||(28297805-28297915)
chr6 (159-269)||(28514158-28514268)
chr6 (93-206)||(26949580-26949693)
chr6 (104-193)||(27214347-27214436)
chr6 (104-193)||(27234792-27234881)
chr6 (93-193)||(25071578-25071678)
[»] scaffold0038 (4 HSPs)
scaffold0038 (40-269)||(34591-34820)
scaffold0038 (46-269)||(42838-43061)
scaffold0038 (92-269)||(27366-27543)
scaffold0038 (84-269)||(116706-116891)
[»] chr4 (6 HSPs)
chr4 (18-269)||(18724164-18724415)
chr4 (18-269)||(18731583-18731834)
chr4 (75-269)||(18679646-18679840)
chr4 (18-269)||(18699479-18699730)
chr4 (75-269)||(18655556-18655750)
chr4 (40-238)||(5091077-5091275)
[»] scaffold0019 (1 HSPs)
scaffold0019 (40-269)||(58374-58603)
[»] chr1 (3 HSPs)
chr1 (69-269)||(268436-268636)
chr1 (48-269)||(28127758-28127980)
chr1 (48-269)||(28164441-28164662)
[»] scaffold0349 (2 HSPs)
scaffold0349 (25-264)||(14452-14691)
scaffold0349 (87-269)||(3513-3696)
[»] chr8 (2 HSPs)
chr8 (18-269)||(29273862-29274113)
chr8 (51-163)||(31903728-31903840)
[»] chr2 (1 HSPs)
chr2 (87-269)||(3279601-3279783)
[»] scaffold1254 (1 HSPs)
scaffold1254 (87-268)||(10-191)
[»] scaffold0419 (1 HSPs)
scaffold0419 (87-268)||(7438-7619)
[»] scaffold0277 (2 HSPs)
scaffold0277 (87-268)||(13725-13906)
scaffold0277 (48-269)||(4763-4984)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 28139386 - 28139636
Alignment:
Q  19 tgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28139386 tgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaa 28139485  T
Q  119 tctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28139486 tctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccatt 28139585  T
Q  219 gaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28139586 gaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 28139636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 269
Target Start/End: Original strand, 26646353 - 26646574
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    ||||| || ||||| ||| | ||||| |||| |||||| |||||||||||||||  |||||| |||||| |||||||||| ||||||  ||||   ||||    
T  26646353 tcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaa 26646452  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    | ||||| || ||||||||| | || ||| |  |||| || |||||  |||| |||||| | || ||||||||||||||||||||||| || ||||||||    
T  26646453 ttcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgtt 26646552  T
Q  248 ttccatcaactatgcctcttct 269  Q
    ||| ||||||||||||||||||    
T  26646553 ttctatcaactatgcctcttct 26646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 269
Target Start/End: Original strand, 26752321 - 26752542
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    ||||| || ||||| ||| | ||||| |||| |||||| |||||||||||||||  |||||| |||||| |||||||||| ||||||  ||||   ||||    
T  26752321 tcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaa 26752420  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    | ||||| || ||||||||| | || ||| |  |||| || |||||  |||| |||||| | || ||||||||||||||||||||||| || ||||||||    
T  26752421 ttcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgtt 26752520  T
Q  248 ttccatcaactatgcctcttct 269  Q
    ||| ||||||||||||||||||    
T  26752521 ttctatcaactatgcctcttct 26752542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 28234430 - 28234659
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||||||||||||||| ||||| || || || || || || || ||||| ||||||||||| |  ||||| || | ||||||||| | ||||||| || |    
T  28234430 cttctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtca 28234529  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   ||||||||||| || |||||||| ||||||||||||||||| || |||||| |||| |||||  | || ||||||||||| ||||||||||||||     
T  28234530 caagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcatt 28234629  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    ||||| || || ||||| ||||| ||||||    
T  28234630 cctgtcttgtctatcaattatgcttcttct 28234659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 28242676 - 28242899
Alignment:
Q  46 tctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtgg 145  Q
    |||||||||| || || || |||||||| || || || ||||| |||||||||||||  ||||| ||||||||||||||||||| |||| || |    ||    
T  28242676 tctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaaggg 28242775  T
Q  146 aatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtg 245  Q
    ||| | ||| || |||||||| || || |||| |||||||||| ||||| |||| |||||  | || ||||||||||| |||||||||||||| |||||     
T  28242776 aattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 28242875  T
Q  246 ttttccatcaactatgcctcttct 269  Q
    || || ||||| ||||| ||||||    
T  28242876 ttgtctatcaattatgcttcttct 28242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 31284195 - 31284382
Alignment:
Q  81 ttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaag 180  Q
    ||||| || ||||||||||| |  |||||||| || ||||||||||| ||||||  ||||   ||||||||||| || ||||||||||| || ||||||     
T  31284195 ttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaa 31284294  T
Q  181 gaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    |||| || |||||  |||| |||||||  || ||||||||||| ||||||||||| ||||| ||||||||   |||||||||||||||    
T  31284295 gaggggatgaaatcacaccatcactcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttc 31284382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 26622883 - 26623052
Alignment:
Q  81 ttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaag 180  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||  ||||   ||||||||||| || ||||||||| | || ||||||     
T  26622883 ttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaa 26622982  T
Q  181 gaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttc 250  Q
    |||| ||||||||   ||| ||||| |  || || || ||||| ||||||||||| || |||||||||||    
T  26622983 gaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttc 26623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 26728861 - 26729030
Alignment:
Q  81 ttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaag 180  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||  ||||   ||||||||||| || ||||||||| | || ||||||     
T  26728861 ttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaa 26728960  T
Q  181 gaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttc 250  Q
    |||| ||||||||   ||| ||||| |  || || || ||||| ||||||||||| || |||||||||||    
T  26728961 gaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttc 26729030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 27611335 - 27611094
Alignment:
Q  28 cttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaa 127  Q
    |||| |||||| |||| || |||||||| ||||| ||| | || || ||||| || || |||| |||||||||   |||||| || ||||||||||||||    
T  27611335 cttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaa 27611236  T
Q  128 agctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatct 227  Q
     ||||||  ||||   |||||||| || || |||||||| |  || |||| | |||| || |||||  |||| |||||| | || |||||||| ||||||    
T  27611235 ggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatct 27611136  T
Q  228 aggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||||| || ||||||||||| ||||||||||||||||||    
T  27611135 aggatttttattcctgtgttttctatcaactatgcctcttct 27611094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 27593363 - 27593112
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| ||||| |||||  | |||||||  | || |||| | || || ||||| |||||||| ||||||||||| | ||||||||| || |    
T  27593363 atgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttcaccggca 27593264  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    |||||||||| ||||||  ||||   |||||| |||| || |||||||| |  |  |||||| ||||  | |||||  |||| |||||  | || |||||    
T  27593263 atctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttctcaaggccat 27593164  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||||||||||    
T  27593163 tgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttct 27593112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 27678790 - 27679041
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| ||||| |||||  | |||||||  | || |||| | || || ||||| |||||||| ||||||||||| | ||||||||| || |    
T  27678790 atgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttcaccggga 27678889  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    |||||||||| ||||||  ||||   |||||| |||| || |||||| | |  |  |||||| |||| || |||||  |||| |||||  | || |||||    
T  27678890 atctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatcacttctcaaggccat 27678989  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||||||||||    
T  27678990 tgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttct 27679041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 26342255 - 26342026
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| ||||| ||||| |||||||| ||||| || ||||  || || |||| || |||||| |  ||||| ||||| ||| |||| | ||||||  ||||    
T  26342255 cttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatctatagagctctatgtga 26342156  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    | ||||| ||| ||| || |||||||||||||||||||| ||||||||| ||||  |||  ||||| || |||||||||||||| || |||||||||||     
T  26342155 cggtggagtccgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcatt 26342056  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    ||  | || || ||||||||||| ||||||    
T  26342055 ccaattttctcaatcaactatgcttcttct 26342026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 268
Target Start/End: Original strand, 26802355 - 26802536
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| ||||||||| | |||||| || || ||||||||||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| |    
T  26802355 ggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggag 26802454  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | |||||  |||| |||||| | || ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||    
T  26802455 atgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgttttctatcaactatgcctcttc 26802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 27718700 - 27718471
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| |||||| |||| ||||| ||| | || || ||||| || || |||| |||||||||   | |||| || |||||||||||||| ||||||  |||    
T  27718700 cttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactga 27718601  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   |||||||| || || |||||||| |  || |||||| |||| || |||||  |||| |||||| | || |||||||| |||||||||||||| ||     
T  27718600 caagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttatt 27718501  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    ||||||||||| ||||||||||||||||||    
T  27718500 cctgtgttttctatcaactatgcctcttct 27718471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 28185232 - 28185461
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| ||||||||||| ||||| || || || || || ||||| ||||| |||||||||||||   |||| |||||||||||| | | ||||||| ||||    
T  28185232 cttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagagctctttgtga 28185331  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   |||||||  || || || ||||| || ||||||||||||||||| |||||| || | |||||  | || ||||||||||| ||||||||||||||     
T  28185332 caagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcatt 28185431  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    || || || || ||||| ||||| ||||||    
T  28185432 cccgtcttgtctatcaattatgcttcttct 28185461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 269
Target Start/End: Complemental strand, 27677894 - 27677706
Alignment:
Q  81 ttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaag 180  Q
    |||||||| ||||||||||| | ||||||||| || ||||||||||| ||||||  ||||   ||||||||||| || |||||  ||   || ||||||     
T  27677894 ttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaa 27677795  T
Q  181 gaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||| || |||||  |||| |||||  | || ||||||||||| ||||||||||| ||  |||||||||| ||||||||||||||||||    
T  27677794 gaggggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttct 27677706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 27725119 - 27724937
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || |||||||||||||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| |    
T  27725119 ggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggag 27725020  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    | |||||  |||| |||||| | || |||||||| |||||||||||||| || ||||||||||| ||||||||||||| ||||    
T  27725019 atgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattct 27724937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 28180980 - 28181209
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| ||||||||||| ||||| || || |  || || ||||| |||||  ||||||||||||  ||||| |||||||||||| | | ||||||| ||||    
T  28180980 cttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagagctctttgtga 28181079  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   |||||||  || || || ||||| || ||||||||||||||||| |||||| || | |||||  | || ||||||||||| ||||||||||||||     
T  28181080 caagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcatt 28181179  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    || || || || ||||| ||||| ||||||    
T  28181180 cccgtcttgtctatcaattatgcttcttct 28181209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 28226868 - 28227045
Alignment:
Q  92 tgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaa 191  Q
    |||||||||||  ||||| ||||||||||||||||  | |||| || |    ||||| ||||| ||  |||||||||| ||||||||||||||||| |||    
T  28226868 tgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaa 28226967  T
Q  192 atatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||| || | |||||  | || | |||||||||||||||||||||||| ||||| || || ||||| ||||| ||||||    
T  28226968 ataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttct 28227045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 27698830 - 27698586
Alignment:
Q  25 caccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctcta 124  Q
    ||||||| || || ||||| || |||||||| ||||| ||| | || ||  |||| || || |||| |||||||||   |||||| || |||||||||||    
T  27698830 caccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctcta 27698731  T
Q  125 caaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaa 224  Q
    ||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| || |||||  |||| |||||| | || |||||||| |||    
T  27698730 caaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaa 27698631  T
Q  225 tctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||||||||||| || |||||||||||  |||||||||| ||||||    
T  27698630 tctaggatttttattcctgtgttttctctcaactatgcatcttct 27698586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 205
Target Start/End: Complemental strand, 26893781 - 26893627
Alignment:
Q  51 tatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatcc 150  Q
    ||||| ||||| ||||||||||| ||||  || ||||||  |||||||||||| ||||| || ||  |||| || ||||||||| ||||  ||||||| |    
T  26893781 tatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctttgtgatagtggaattc 26893682  T
Q  151 acacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcact 205  Q
    |||| || ||||||||||  ||||||||  ||||||||||||| ||||| |||||    
T  26893681 acaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcact 26893627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 269
Target Start/End: Original strand, 26884037 - 26884258
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||| ||| | || || ||||| |||||||| ||||||||||| |  ||||||||||||||||||||||| ||||||  | ||   ||||    
T  26884037 tcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctcttactaacaagggaa 26884136  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    ||||||| || ||||||||||   | |||| | ||||   ||||||  |||| |||||| | || ||||||||||||||||| ||||| || ||  | ||    
T  26884137 tccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattccaatatt 26884236  T
Q  248 ttccatcaactatgcctcttct 269  Q
    ||| | ||||||||| ||||||    
T  26884237 ttctaccaactatgcatcttct 26884258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 28786152 - 28786363
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||| ||| | || || ||||| || || |||| |||||||||   |||||| || |||||||||||||| ||||||  ||||   ||||    
T  28786152 tcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaa 28786251  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    || | || || |||||||| |  || |||||| |||| || |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||    
T  28786252 tcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgtt 28786351  T
Q  248 ttccatcaacta 259  Q
    ||| ||||||||    
T  28786352 ttctatcaacta 28786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 28792273 - 28792484
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||| ||| | || || ||||| || || |||| |||||||||   |||||| || |||||||||||||| ||||||  ||||   ||||    
T  28792273 tcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaa 28792372  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    || | || || |||||||| |  || |||||| |||| || |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||    
T  28792373 tcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgtt 28792472  T
Q  248 ttccatcaacta 259  Q
    ||| ||||||||    
T  28792473 ttctatcaacta 28792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 27706688 - 27706494
Alignment:
Q  75 ctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagc 174  Q
    ||||| ||||||||  |||||||||| | ||||||||| || ||||||||||| ||| ||  ||||   ||||||||||| || |||||  ||   || |    
T  27706688 ctcagtttcagaggaggtgacactcggtacggtttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaac 27706589  T
Q  175 ttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||||| || | || |||||  |||| |||||  | || ||||||||||| ||||||||||| || ||||||||||| |||| |||||||||||||    
T  27706588 ttcaaagaagggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttct 27706494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 269
Target Start/End: Original strand, 28325391 - 28325576
Alignment:
Q  84 agaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggag 183  Q
    ||||| |||||||||||||  ||||| ||||||||||||||||||| |||| ||       |||| |  || || |||||||| |  || |||||| |||    
T  28325391 agaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgag 28325490  T
Q  184 gtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||||||||||| ||||||||||  | || ||||||||||| |||||||||||||| ||| | || || ||||| ||||| ||||||    
T  28325491 gtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttct 28325576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 268
Target Start/End: Original strand, 28781052 - 28781233
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || || ||||||||||| ||||||  ||||   |||||| | || || |||||||| |  || |||||| |||| |    
T  28781052 ggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggag 28781151  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||||| |||||||||||| ||||    
T  28781152 atgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttc 28781233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 268
Target Start/End: Original strand, 26861490 - 26861710
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| |||| |||| | || || ||||| |||||||| ||||||||||| |  ||||| || || ||||||||||| ||||||  ||||   ||||    
T  26861490 tcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctcttactgacaagggaa 26861589  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    | ||||| || || |||||| | || |||||| |||| || |||||   |   |||||||  || ||||||||||| ||||| |||||||| ||||||||    
T  26861590 ttcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaatgccattgaagagtctagaattttcattcctgtgtt 26861689  T
Q  248 ttccatcaactatgcctcttc 268  Q
    |||   |||||||||||||||    
T  26861690 ttctgccaactatgcctcttc 26861710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 26936960 - 26937189
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| ||||| ||||| ||||| || || || || ||||| ||||||||||  |||||||| |||  ||| | |||  |||| |||||||||||| ||||    
T  26936960 cttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgcttccattttattggtcatctttacaaagctctttgtga 26937059  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
     |||||||| | ||| || |||||||| | |||||| || ||||| || |||||  |||| ||||| || || || |||||||| ||  |||||  |||     
T  26937060 ttgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccata 26937159  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    ||||| || || |||||||||||| |||||    
T  26937160 cctgtattctctatcaactatgccacttct 26937189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 26823879 - 26823935
Alignment:
Q  213 gccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||||||||||| ||||||||||| || |||||||||||   ||||||||||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttct 26823935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 27229145 - 27229293
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || || ||||||||||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| |    
T  27229145 ggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggag 27229244  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggatttt 235  Q
    |||||||  |||| |||||||| || |||||||| |||||| |||||||    
T  27229245 acgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttt 27229293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 27604853 - 27604797
Alignment:
Q  213 gccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||||| ||||| |||||||| || ||||||||||| ||||| ||||||||||||    
T  27604853 gccattgatgaatccaggatttttattcctgtgttttctatcaaatatgcctcttct 27604797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 25507057 - 25507002
Alignment:
Q  213 gccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    ||||||||||||||||||||||| || || ||  |||| |||||||||||||||||    
T  25507057 gccattgaagaatctaggatttttattccggttctttctatcaactatgcctcttc 25507002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 2184866 - 2184968
Alignment:
Q  142 gtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccc 241  Q
    ||||| |||||||||| || |||||    ||||||||| |||| |  |||||| |||| || || || ||||||||||||||||| || |||||||||||    
T  2184866 gtggagtccacactttcatggatgacgaagagcttcaacgagggggtgaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccc 2184965  T
Q  242 tgt 244  Q
    |||    
T  2184966 tgt 2184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 28149912 - 28150001
Alignment:
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcat 238  Q
    ||||||| || |||||||||| ||||||| || |||| ||||||||  |||| |||||| | || ||||||||||| || |||||||||||    
T  28149912 tccacaccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactc-tcaaggccattgaagagtccaggattttcat 28150001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 28297915 - 28297805
Alignment:
Q  159 attgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaact 258  Q
    |||||||| || |||||| ||||||||||||||||| |||| |||||  | ||   |||||||||  ||||||||||||| ||||| || || | ||| |    
T  28297915 attgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaatt 28297816  T
Q  259 atgcctcttct 269  Q
    |||| ||||||    
T  28297815 atgcttcttct 28297805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 28514158 - 28514268
Alignment:
Q  159 attgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaact 258  Q
    |||||||| || |||||| ||||||||||||||||| |||| |||||  | ||   |||||||||  ||||||||||||| ||||| || || | ||| |    
T  28514158 attgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaatt 28514257  T
Q  259 atgcctcttct 269  Q
    |||| ||||||    
T  28514258 atgcttcttct 28514268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 26949580 - 26949693
Alignment:
Q  93 gacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaa 192  Q
    |||||||| ||||||||||| || |||||||| ||||||||   ||||   |||||||  || || |||||||||| |||||||||   |||||||||||    
T  26949580 gacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaa 26949679  T
Q  193 tatcaccgtcactc 206  Q
    |  |||| ||||||    
T  26949680 tcacaccttcactc 26949693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 27214347 - 27214436
Alignment:
Q  104 cggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaat 193  Q
    ||||||||| || |||||||| ||||||||| |||||   |||||||  || || |||||||| | |||||||||  |||||||||||||    
T  27214347 cggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 27214436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 27234881 - 27234792
Alignment:
Q  104 cggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaat 193  Q
    ||||||||| || |||||||| ||||||||| |||||   |||||||  || || |||||||| | |||||||||  |||||||||||||    
T  27234881 cggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaat 27234792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 25071578 - 25071678
Alignment:
Q  93 gacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaa 192  Q
    |||||||| |||||||| || || ||||| || |||||||||  ||||   ||||||||||| ||||||||||| |  |||||| |  ||||||||||||    
T  25071578 gacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaagagcttaagagaggtgacgaaa 25071677  T
Q  193 t 193  Q
    |    
T  25071678 t 25071678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 34591 - 34820
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||||||||||||||| ||||| || || || || || || || ||||| ||||||||||| |  ||||| || | ||||||||| | ||||||| || |    
T  34591 cttctttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtca 34690  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   ||||||||||| || |||||||| ||||||||||||||||| || |||||| |||| |||||  | || ||||||||||| ||||||||||||||     
T  34691 caagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcatt 34790  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    ||||| || || ||||| ||||| ||||||    
T  34791 cctgtcttgtctatcaattatgcttcttct 34820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 42838 - 43061
Alignment:
Q  46 tctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtgg 145  Q
    |||||||||| || || || |||||||| || || || ||||| |||||||||||||  ||||| ||||||||||||||||||| |||| || |    ||    
T  42838 tctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaaggg 42937  T
Q  146 aatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtg 245  Q
    ||| | ||| || |||||||| || || |||| |||||||||| ||||| |||| |||||  | || ||||||||||| |||||||||||||| |||||     
T  42938 aattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtc 43037  T
Q  246 ttttccatcaactatgcctcttct 269  Q
    || || ||||| ||||| ||||||    
T  43038 ttgtctatcaattatgcttcttct 43061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 269
Target Start/End: Original strand, 27366 - 27543
Alignment:
Q  92 tgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaa 191  Q
    |||||||||||  ||||| ||||||||||||||||  | |||| || |    ||||| ||||| ||  |||||||||| ||||||||||||||||| |||    
T  27366 tgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaa 27465  T
Q  192 atatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||| || | |||||  | || | |||||||||||||||||||||||| ||||| || || ||||| ||||| ||||||    
T  27466 ataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttct 27543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 269
Target Start/End: Original strand, 116706 - 116891
Alignment:
Q  84 agaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggag 183  Q
    ||||| |||||||||||||  ||||| ||||||||||||||||||| |||| ||       |||| |  || || |||||||| |  || |||||| |||    
T  116706 agaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgag 116805  T
Q  184 gtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    ||||||||||| ||||||||||  | || ||||||||||| |||||||||||||| ||| | || || ||||| ||||| ||||||    
T  116806 gtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattatgcttcttct 116891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18724415 - 18724164
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| || ||  |||| || |||||| | ||||| ||| | || || ||||||||||| |||||||||||||||  |||||| |||||      
T  18724415 atgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtc 18724316  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    |||||||||| ||||||  ||||   ||||||||||| || ||||||||  | || || ||| |||| || |||||   ||| |||||||  || |||||    
T  18724315 atctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccat 18724216  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  18724215 tgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 18724164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18731834 - 18731583
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| || ||  |||| || |||||| | ||||| ||| | || || ||||||||||| |||||||||||||||  |||||| |||||      
T  18731834 atgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggcc 18731735  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    ||||||||| |||||||  ||||   ||||||||||| || ||||||||  | || || ||| |||| || |||||   ||| |||||||  || |||||    
T  18731734 atctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccat 18731635  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  18731634 tgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 18731583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 18679840 - 18679646
Alignment:
Q  75 ctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagc 174  Q
    ||||||||||| |||||||||||||||  |||||| |||||  |||||||||| ||||||  ||||   ||||||||||| || ||||||||  | || |    
T  18679840 ctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacc 18679741  T
Q  175 ttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    | ||| |||| || |||||   ||| |||||||  || ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  18679740 tgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 18679646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18699730 - 18699479
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| || ||  |||| || |||||| | ||||| ||| | || || ||||||||||| |||| ||||||||||  |||||| |||||      
T  18699730 atgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggcc 18699631  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    |||||||||||||||||  ||||   ||||||||||| || ||||||||  | || || ||| | || || |||||   ||| |||||||  || |||||    
T  18699630 atctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcgacaatgccat 18699531  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  18699530 tgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 18699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 18655750 - 18655556
Alignment:
Q  75 ctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagc 174  Q
    ||||||||||| |||||||||||||||  |||||| |||||  |||||||||||||||||  ||||   ||||||||||| || ||||||||  | ||||    
T  18655750 ctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgagc 18655651  T
Q  175 ttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    | ||| | || || |||||   ||| |||||||  || |||||| |||| |||||||| || || ||||||||||| ||||||||||||||||||    
T  18655650 tgcaaagtggggatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctttattcctgtgttttctatcaactatgcctcttct 18655556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 5091275 - 5091077
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    ||||||||||||| || || || ||||| |||||||| || || |||||||  |||||||||| |||||| ||||||||||||||  ||||||| ||||     
T  5091275 cttctttctcctacggatttacctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgt 5091176  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcat 238  Q
    |   ||||| ||||| || |||||||| || ||||||||  |||| ||| ||||| ||||||||||  | || |||||| ||||||||| |||| ||||    
T  5091175 caagggaattcacaccttcattgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcat 5091077  T

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Target: scaffold0019 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 58603 - 58374
Alignment:
Q  40 cttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtga 139  Q
    |||| ||||||||||| ||||| ||  | || || || ||||| |||||  |||||||||| |  ||||| |||||||||||||||| ||||||| ||||    
T  58603 cttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtga 58504  T
Q  140 ctgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatc 239  Q
    |   |||||||  || || || ||||| || |||||||||||||||||||||||| |||| |||||  | || |||||| |||| ||||||||||||||     
T  58503 caagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcatt 58404  T
Q  240 cctgtgttttccatcaactatgcctcttct 269  Q
    || || || || ||||||||||| ||||||    
T  58403 cccgtcttgtctatcaactatgcttcttct 58374  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 268636 - 268436
Alignment:
Q  69 gtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgata 168  Q
    ||||| |||| |||||||||| |||||||||||   ||||| | |||  |||||||||| ||||||  ||||   ||||||||||| || |||||||||     
T  268636 gtcttcctcaacttcagaggcggtgacactcgtgagggttttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatc 268537  T
Q  169 gggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | || |||||| |||| || |||||   ||| |||||||  || ||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||    
T  268536 gtgaacttcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttc 268437  T
Q  269 t 269  Q
    |    
T  268436 t 268436  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 269
Target Start/End: Complemental strand, 28127980 - 28127758
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||||||| | || || ||||||||||| |||||||||||||||  ||||||||||||  |||||||||| || |||  ||||   ||||    
T  28127980 tcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctttatgacaagggaa 28127881  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtg-acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgt 246  Q
    ||||||| || ||||||||| |  | ||| |  |||| | |  ||||  ||||||||||  |||| ||||||||||||||||| ||||| || ||||| |    
T  28127880 tccacacattcattgatgattgtaatcttgagagaggagaaaaaaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtat 28127781  T
Q  247 tttccatcaactatgcctcttct 269  Q
    |||| | ||||||||||||||||    
T  28127780 tttctaccaactatgcctcttct 28127758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 269
Target Start/End: Complemental strand, 28164662 - 28164441
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||||||| | || || ||||| || || |||||||||||||||  ||||||||||||  ||||||| || || |||   |||   ||||    
T  28164662 tcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaa 28164563  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    | ||||| || ||||||||| | || ||| |  |||| || |||||  |||||||| || | || ||||||||| ||||| | ||||| || ||||||||    
T  28164562 ttcacacattcattgatgattgtgatcttgagagaggagaagaaatcacaccgtcattcatcaaggccattgaaaaatcttgaatttttattcctgtgtt 28164463  T
Q  248 ttccatcaactatgcctcttct 269  Q
     || ||||||||||||||||||    
T  28164462 atctatcaactatgcctcttct 28164441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 14691 - 14452
Alignment:
Q  25 caccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctcta 124  Q
    ||||||| || || ||||| || |||||||| ||||| ||| | || ||  |||| || || |||| |||||||||   |||||| || |||||||||||    
T  14691 caccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctcta 14592  T
Q  125 caaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaa 224  Q
    ||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| || |||||  |||| |||||| | || |||||||| |||    
T  14591 caaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaa 14492  T
Q  225 tctaggattttcatccctgtgttttccatcaactatgcct 264  Q
    ||||||||||| || ||||||||||| |||||||||||||    
T  14491 tctaggatttttattcctgtgttttctatcaactatgcct 14452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 269
Target Start/End: Complemental strand, 3696 - 3513
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || |||||||||||||| ||||||  ||||   |||||||| || || |||||||| |  || |||||| |||| |    
T  3696 ggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggag 3597  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaa-ctatgcctcttct 269  Q
    | |||||  |||| |||||| | || |||||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||    
T  3596 atgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttct 3513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 29274113 - 29273862
Alignment:
Q  18 atgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaa 117  Q
    |||||| ||||||| |||||  ||||  |||| ||||| ||||| ||| | ||||| |||| ||| |||||| |||||||||||  |||||| | |||      
T  29274113 atgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttttattggcc 29274014  T
Q  118 atctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccat 217  Q
    ||||||||||  |||||  ||||   ||||||||||| || ||||||||| | || |||||| |||| || |||||   | | |||||||  || | |||    
T  29274013 atctctacaagactcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactcgacaatgtcat 29273914  T
Q  218 tgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    |||||| ||||| ||||| || ||||||||||| ||||||||||||||||||    
T  29273913 tgaagagtctagaatttttattcctgtgttttctatcaactatgcctcttct 29273862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 31903728 - 31903840
Alignment:
Q  51 tatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatcc 150  Q
    ||||| ||||| |||||||| || |||||||| ||||||   |||||||| |  ||||| ||||||||||||||||||||||||  |||    |||||||    
T  31903728 tatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatcc 31903827  T
Q  151 acacttttattga 163  Q
    |||| ||||||||    
T  31903828 acacctttattga 31903840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 3279601 - 3279783
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| ||||||||| |  ||||| |||||||||||||| | |||| |  ||||| ||||| ||  ||| || |||||||||||||||||||| |||||||    
T  3279601 ggcactgacactcgctatggttttactggaaatctctatagagctttaagtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtg 3279700  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttct 269  Q
    | |||||  |||  ||||| || || ||||| ||||| || | |||||| || || || || || ||||||||||| ||||||    
T  3279701 atgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttct 3279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 191 - 10
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || || ||||||||||| ||||||  ||||   |||||| | || || |||||||| |  || |||||| |||| |    
T  191 ggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggag 92  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| ||||    
T  91 atgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 268
Target Start/End: Original strand, 7438 - 7619
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || || ||||||||||| ||||||  ||||   |||||| | || || |||||||| |  || |||||| |||| |    
T  7438 ggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggag 7537  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| ||||    
T  7538 atgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 13906 - 13725
Alignment:
Q  87 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 186  Q
    |||| |||||||||   |||||| || || ||||||||||| ||||||  ||||   |||||| | || || |||||||| |  || |||||| |||| |    
T  13906 ggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggag 13807  T
Q  187 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttc 268  Q
    | |||||  |||| |||||| | || ||||| ||||||||||||||||| || ||||||||||| |||||||| ||| ||||    
T  13806 atgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 13725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 269
Target Start/End: Complemental strand, 4984 - 4763
Alignment:
Q  48 tcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaa 147  Q
    |||||||| ||||| ||| | || || ||||| || || |||| |||||||||   |||||| || |||||||||||||| ||||||  ||||   ||||    
T  4984 tcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaa 4885  T
Q  148 tccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgtt 247  Q
    || | || || |||||||| |  || |||||| |||| || |||||  |||| || |||   || |||||||| |||||||||||||| || ||||||||    
T  4884 tcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttttattcctgtgtt 4785  T
Q  248 ttccatcaactatgcctcttct 269  Q
    ||| |||  |||||||| ||||    
T  4784 ttctatcttctatgccttttct 4763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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