View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9255_low_7 (Length: 252)
Name: NF9255_low_7
Description: NF9255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9255_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21597379 - 21597608
Alignment:
| Q |
1 |
taaggaatcactatcatattcatttacaaaatcaattttacaatcactctctcaaatcttttcaatctctctttctacaaactcttgattaaacactttt |
100 |
Q |
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| T |
21597379 |
taaggaatcactatcatattcatttacaaaatcaattttacaatcactctctcaaaccttttcaatctctctttctacaaactcttgattaaacactttt |
21597478 |
T |
|
| Q |
101 |
tgaaagatcttgattccacaaatcaaaatattctttgaaattgactatgtgcttcaacaacataatagtggaagaccgcgtagtagatatatatgttaag |
200 |
Q |
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| T |
21597479 |
tgaaagatcttgattccacaaatcaaaatattctttgaaattgactatgtgcttcaacaacataatagtggaagaccgcgtagtagatatatatgttaag |
21597578 |
T |
|
| Q |
201 |
tgattgaaagtgttaaacctaattttcttg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21597579 |
tgattgaaagtgttaaacctaattttcttg |
21597608 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 27595432 - 27595388
Alignment:
| Q |
194 |
tgttaagtgattgaaagtgttaaacctaattttcttgaaataatt |
238 |
Q |
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| T |
27595432 |
tgttaagtgattgaatatgttaaacctaactttcttgaaataatt |
27595388 |
T |
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