View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9256_low_2 (Length: 456)
Name: NF9256_low_2
Description: NF9256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9256_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 147 - 386
Target Start/End: Original strand, 25542732 - 25542961
Alignment:
| Q |
147 |
gtgttccgcctatgtccagcaccctatttgttatgtctgatagtattagtgtcaggataatttaaaattcaaattcaaatttatacttttgttatataaa |
246 |
Q |
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| T |
25542732 |
gtgttccgcctatgtacggcaccctatttgttatgtctgatagt------gtcatggtaattttaaattcaaattcaaatttatacttttgttatataaa |
25542825 |
T |
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| Q |
247 |
cccttaaaacattcactatatcatctatttatcacaataaaatttgttattgtccatcaccaattaattttttattcaatgcaggataaggccctccaag |
346 |
Q |
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| T |
25542826 |
cccttaaaacattcactagatcatctat----cacaataaaatttgttattgtctatcaccaattaattttttattcaatgcaggataaggccctccaag |
25542921 |
T |
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| Q |
347 |
nnnnnnncaaattgcttacaataaaggttatactaatgta |
386 |
Q |
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| T |
25542922 |
aaaaaaacaaattgcttacaacaaaggttatactaatgta |
25542961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 25542661 - 25542731
Alignment:
| Q |
38 |
ctatctgatctgggagggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgc |
108 |
Q |
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| T |
25542661 |
ctatctaacctgggtgggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgc |
25542731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 3594987 - 3595040
Alignment:
| Q |
37 |
gctatctgatctgggagggaagtcttttctgtttgtgaggcctgtttgtgtttt |
90 |
Q |
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| T |
3594987 |
gctatctggtctgggagggaagtcttttctgtttgtgaggcccgtttgtgtttt |
3595040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 3595057 - 3595123
Alignment:
| Q |
94 |
gtctgctgtttgcgcccccc-ttttttctggttgtcggtggttgtttggttggggtgttccgcctat |
159 |
Q |
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| T |
3595057 |
gtctgctgtttgtgccccccattttttctggtttttggtggttttatagttggggtgtgccgcctat |
3595123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 32017340 - 32017448
Alignment:
| Q |
52 |
agggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgcc-ccccttttttctggttgtcggtggttgtttggttggggtgt |
150 |
Q |
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| T |
32017340 |
agggaggtctttgctgtttgtgaggcctttttatgctttctggtctgctgtttgcacctccccttttttctggtttttggtggtttttttgttagggtgt |
32017439 |
T |
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| Q |
151 |
tccgcctat |
159 |
Q |
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| T |
32017440 |
tccgcctat |
32017448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 5179609 - 5179699
Alignment:
| Q |
86 |
gttttctggtctgctgtttgcgccccccttttttctggttgtcggtggttgtttggttggggtgttccgcctatgtccagcaccctatttg |
176 |
Q |
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| T |
5179609 |
gttttctggtctgatatttgcgcccccattgtttatggtttttgttggttttatggttggggtgttccgcctatatacggcaccctgtttg |
5179699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 37604771 - 37604714
Alignment:
| Q |
52 |
agggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgcc |
109 |
Q |
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| T |
37604771 |
agggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctgctgtttgcgcc |
37604714 |
T |
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