View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9256_low_3 (Length: 365)

Name: NF9256_low_3
Description: NF9256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9256_low_3
NF9256_low_3
[»] chr3 (8 HSPs)
chr3 (20-357)||(25084957-25085292)
chr3 (79-357)||(24981965-24982243)
chr3 (53-357)||(24923419-24923723)
chr3 (69-357)||(24497234-24497522)
chr3 (27-357)||(24919817-24920149)
chr3 (70-321)||(31825533-31825784)
chr3 (79-357)||(21584582-21584860)
chr3 (75-116)||(14858629-14858670)
[»] chr7 (4 HSPs)
chr7 (82-336)||(10575327-10575581)
chr7 (87-357)||(39954838-39955108)
chr7 (134-342)||(354338-354547)
chr7 (168-336)||(10580727-10580895)
[»] chr8 (1 HSPs)
chr8 (79-330)||(14261017-14261268)
[»] chr2 (1 HSPs)
chr2 (110-336)||(41027512-41027738)
[»] chr4 (3 HSPs)
chr4 (87-336)||(53328654-53328903)
chr4 (104-336)||(22898493-22898725)
chr4 (104-336)||(22950161-22950393)
[»] chr5 (1 HSPs)
chr5 (95-333)||(26358549-26358787)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 25085292 - 25084957
Alignment:
Q  20 caattgcaagtctaaggcaaaagaaaataacatataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtc 119  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||    
T  25085292 caattacaagtctaaggcaaaagaaaataacaaataaactaaagagtgtttcttct--gtcttcttcaacctccaaaaccatagagggttcttccctgtc 25085195  T
Q  120 tcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatctt 219  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  25085194 tcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatctt 25085095  T
Q  220 caagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatg 319  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  25085094 caagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatg 25084995  T
Q  320 ttatcacgaagaaccttcctatgcctctctgctcctcc 357  Q
    ||||||||||||||||| |||||||||| ||| |||||    
T  25084994 ttatcacgaagaacctttctatgcctctttgcacctcc 25084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 79 - 357
Target Start/End: Complemental strand, 24982243 - 24981965
Alignment:
Q  79 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 178  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  24982243 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 24982144  T
Q  179 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 278  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24982143 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T
Q  279 ttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 357  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  24982043 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctcc 24981965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 53 - 357
Target Start/End: Original strand, 24923419 - 24923723
Alignment:
Q  53 ataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaa 152  Q
    ||||||||||||||||||||||||  | ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |    
T  24923419 ataaactaaagagtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtca 24923518  T
Q  153 cagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 252  Q
    | |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24923519 ctgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc 24923618  T
Q  253 actgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgct 352  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||     
T  24923619 actgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgca 24923718  T
Q  353 cctcc 357  Q
    |||||    
T  24923719 cctcc 24923723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 24497234 - 24497522
Alignment:
Q  69 ttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgc 168  Q
    ||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  24497234 ttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgc 24497333  T
Q  169 atgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcaca 268  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  24497334 gtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaaca 24497433  T
Q  269 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 357  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  24497434 ccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctcc 24497522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 357
Target Start/End: Original strand, 24919817 - 24920149
Alignment:
Q  27 aagtctaaggcaaaagaaaataacatataaactaaagagtgtttcttctttgtcttct---tcaacctccgaaaccatagagggttcttccttgtctctt 123  Q
    ||||||||||||||| ||||||| | |||||||||| |||| ||||||||  |||||    |||||||||||| ||||||||||||||||| || |||||    
T  24919817 aagtctaaggcaaaataaaataaaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctctt 24919915  T
Q  124 caaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaag 223  Q
    |||||||||||| ||||||||||| || || ||||||||||| || |||||||||||||| || ||||||||||||||||| || |||||||||||||||    
T  24919916 caaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaag 24920015  T
Q  224 acacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttat 323  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24920016 acacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttat 24920115  T
Q  324 cacgaagaaccttcctatgcctctctgctcctcc 357  Q
    |||||||||| ||||||||||||| ||| |||||    
T  24920116 cacgaagaactttcctatgcctctttgcacctcc 24920149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 70 - 321
Target Start/End: Original strand, 31825533 - 31825784
Alignment:
Q  70 tcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgca 169  Q
    |||||||  ||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| ||     
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  170 tgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacac 269  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  270 cacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgtt 321  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31825733 cacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgtt 31825784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 79 - 357
Target Start/End: Original strand, 21584582 - 21584860
Alignment:
Q  79 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 178  Q
    |||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  179 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 278  Q
    || ||||| ||||||||||| ||||| |||||||| ||||| |  || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  279 ttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 357  Q
    | |||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||    
T  21584782 tcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctcc 21584860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 14858629 - 14858670
Alignment:
Q  75 tttgtcttcttcaacctccgaaaccatagagggttcttcctt 116  Q
    |||||||||||||||| || ||||| ||||||||||||||||    
T  14858629 tttgtcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 82 - 336
Target Start/End: Complemental strand, 10575581 - 10575327
Alignment:
Q  82 tcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtat 181  Q
    ||||||||| |||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| ||||||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  182 gtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttg 281  Q
    ||||| ||||| |  || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| |    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcg 10575382  T
Q  282 ccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaacctt 336  Q
    ||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||    
T  10575381 ccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaacctt 10575327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 357
Target Start/End: Original strand, 39954838 - 39955108
Alignment:
Q  87 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 186  Q
    |||| |||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  187 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaat 286  Q
     ||||||||||| ||||| || |  |||||||| |  ||||| |  || ||||| ||||| | ||| |||||||||||||||||||| |  ||||| |      
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaaga 39955037  T
Q  287 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 357  Q
    |||||||| ||||||||||| || || |||||||| || ||||||||||| || ||||||| |||||||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctcc 39955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 134 - 342
Target Start/End: Complemental strand, 354547 - 354338
Alignment:
Q  134 acaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctgg 233  Q
    ||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||| |||  |||| | |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  234 tttcttcataga-tcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaa 332  Q
    |||| ||||||| | ||||||||||| |||||||||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaa 354348  T
Q  333 ccttcctatg 342  Q
    |||| |||||    
T  354347 ccttgctatg 354338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 336
Target Start/End: Complemental strand, 10580895 - 10580727
Alignment:
Q  168 catgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcac 267  Q
    ||||||||||||| ||||| |||||| ||||   ||| | |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||||||    
T  10580895 catgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcac 10580796  T
Q  268 accacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaacctt 336  Q
    |||| ||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||||||    
T  10580795 accaactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaacctt 10580727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 79 - 330
Target Start/End: Original strand, 14261017 - 14261268
Alignment:
Q  79 tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg 178  Q
    |||||||||||||||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  179 tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttc 278  Q
    || ||||| ||||| |  || ||||| |||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||||||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  279 ttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaag 330  Q
    | || ||||| ||||| || ||||| ||||| || |||||||| ||||||||    
T  14261217 tcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaag 14261268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 110 - 336
Target Start/End: Complemental strand, 41027738 - 41027512
Alignment:
Q  110 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttcca 209  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| ||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  210 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggcttggtgat 309  Q
    | ||||||||||| || || |  || ||||| ||||||||||| || || | |||||| || ||||| | |||||| |||||||| |||||||| || ||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaat 41027539  T
Q  310 accctggatgttatcacgaagaacctt 336  Q
     || || |||||||||||||| |||||    
T  41027538 tccttgaatgttatcacgaagcacctt 41027512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 336
Target Start/End: Complemental strand, 53328903 - 53328654
Alignment:
Q  87 aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac 186  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  |  |||||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  187 tgcatcacgaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaat 286  Q
     ||||||||||| ||||| || |  |||||||| |  || || |  |||||||||||||| || |||||||| | |||||||||||| | |||||| |      
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgaga 53328704  T
Q  287 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaacctt 336  Q
    |||||||| |||||||| ||||| |||||||||||||| || ||||||||    
T  53328703 cgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaacctt 53328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 336
Target Start/End: Complemental strand, 22898725 - 22898493
Alignment:
Q  104 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 203  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  204 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggctt 303  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22898526  T
Q  304 ggtgataccctggatgttatcacgaagaacctt 336  Q
     || || ||||||||||| |||||||| |||||    
T  22898525 tgttattccctggatgttgtcacgaagcacctt 22898493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 336
Target Start/End: Complemental strand, 22950393 - 22950161
Alignment:
Q  104 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat 203  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  204 tttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaatggcaggctt 303  Q
    | ||||| || |||||||| || || |  || || ||||| |||||||||||||| | |||||| || ||||| |  || |  |||||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22950194  T
Q  304 ggtgataccctggatgttatcacgaagaacctt 336  Q
     || || ||||||||||| |||||||| |||||    
T  22950193 tgttattccctggatgttgtcacgaagcacctt 22950161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 333
Target Start/End: Original strand, 26358549 - 26358787
Alignment:
Q  95 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcac 194  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  |  ||||| |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  195 gaatgacattttccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttcacaccacctcttcttgccaatcgacgaat 294  Q
    |||| ||||| || |  || ||||| |  ||||| |  |||||||||||||||| ||||||||| |  || |||||||| |  ||||| |  ||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaat 26358748  T
Q  295 ggcaggcttggtgataccctggatgttatcacgaagaac 333  Q
     || || ||||| || ||||| |||||||| ||||||||    
T  26358749 cgcgggtttggtaattccctgaatgttatctcgaagaac 26358787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University