View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9256_low_4 (Length: 341)
Name: NF9256_low_4
Description: NF9256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9256_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 9069452 - 9069773
Alignment:
| Q |
8 |
ttaccacgtcgtcgccgtctctttttgtccttaaaggatcaataagcataatcaatcattcctgcatcatttttctgtgcaaattgggttcttttttgtt |
107 |
Q |
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| T |
9069452 |
ttaccacgtcgtcgccgtctctttttgtccttaaaggatcaataagcataatcaatcattcctgcatcatttttctgtgcaaattgggttcttttttgtt |
9069551 |
T |
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| Q |
108 |
gtgaattgaattgattttctaattgaattaannnnnnnncgtttgctactttgttgttggttaatttgatgctaccgtatgaaaagtattgagtattttc |
207 |
Q |
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| T |
9069552 |
gtgaattgaattgattttctaattgaattaattttttgtcgttagctactttgttgttcggtaatttgatgccactgtatgaaaagttttgagtattttc |
9069651 |
T |
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| Q |
208 |
tggttctgctgtataatatttaattgttatgctacaaataccaagaattggattatggcctgctaggcgggtgttttgccatataacacttcattaggtt |
307 |
Q |
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| T |
9069652 |
tggttctgctgtataatatttaatcgttatgctacaaataccaagaattggattatggcctgctaggcgggtgttttgccatataacacttcattaggtt |
9069751 |
T |
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| Q |
308 |
ctaatgcggtattcaatagaat |
329 |
Q |
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| T |
9069752 |
ctaatgcggtattcaatagaat |
9069773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 19393318 - 19393397
Alignment:
| Q |
172 |
tttgatgctaccgtatgaaaagtattgagta-ttttctggttctgctgtataatatttaattgttatgctacaaatacca |
250 |
Q |
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| T |
19393318 |
tttgatgctactgtatgaaaagtattgagtatttttttcgttctgttgtatgaaatttaatcgttatgctataaatacca |
19393397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 9290608 - 9290506
Alignment:
| Q |
147 |
cgtttgctactttgttgttggttaatttgatgctaccgtatgaaaagtattgagtattttctggttctgctgtataatatttaattgttatgctacaaat |
246 |
Q |
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| T |
9290608 |
cgttggctactttattgttgggtactttgatgctaccgtaag-aaagtattgggtattttcttgttattctgtatcaaacttaatctttatgctagaaat |
9290510 |
T |
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| Q |
247 |
acca |
250 |
Q |
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|||| |
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| T |
9290509 |
acca |
9290506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 9290693 - 9290651
Alignment:
| Q |
19 |
tcgccgtctctttttgtccttaaaggatcaataagcataatca |
61 |
Q |
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| T |
9290693 |
tcgccgtctctgtttgtccttaaaggatcaataagtataatca |
9290651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 8574937 - 8574998
Alignment:
| Q |
186 |
atgaaaagtattgagtattttctggttctgctgtataatatttaattgttatgctacaaata |
247 |
Q |
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| T |
8574937 |
atgaaaagtattgagtattttttggttctgttgtacgaaattttatcattatgctacaaata |
8574998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 9062851 - 9062923
Alignment:
| Q |
250 |
aagaattggattatggcctgctaggcgggtgttttgccatataacacttcattaggttctaatgcggtattca |
322 |
Q |
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| T |
9062851 |
aagaattggattgtggcctgctaggtgaatgttttactgtataacagttcatttggttctcatgcagtattca |
9062923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 9290450 - 9290378
Alignment:
| Q |
250 |
aagaattggattatggcctgctaggcgggtgttttgccatataacacttcattaggttctaatgcggtattca |
322 |
Q |
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| T |
9290450 |
aagaattggattgtggcttgctaggtggatgttttgctttttaacacttcattagattttgacgcggtattca |
9290378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 19393445 - 19393517
Alignment:
| Q |
250 |
aagaattggattatggcctgctaggcgggtgttttgccatataacacttcattaggttctaatgcggtattca |
322 |
Q |
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| T |
19393445 |
aagaattggactgtggcctgctaggtggatgttttactgtataacaatttattaggttctcatgcagtattca |
19393517 |
T |
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