View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9256_low_6 (Length: 330)
Name: NF9256_low_6
Description: NF9256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9256_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28959543 - 28959237
Alignment:
| Q |
1 |
aatattaatgaaaatgtcgaggctagctaaaaatagggtcttttaagttaaggtattaagtgtctcattcccttgtctatgaataaattcaatatgagag |
100 |
Q |
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| T |
28959543 |
aatattaatgaaaatgtcgaggctagctaaaaatagggtctttcaagctaaggtattaagtgtctcattcccttgtctatgagtaaattcaacatgagag |
28959444 |
T |
|
| Q |
101 |
tttgcacaatataaattaaaccatttttacattcatttaaaaaagcaatgaattatgtaatgtcgttatgaatgttgttgtaataaattacaactttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |
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| T |
28959443 |
tttgcacaatataaattaaaccatttttacattcatttaaaaaagcaatgaattatgcaatgtcattatgactgttgttgtaataaattacaactttctt |
28959344 |
T |
|
| Q |
201 |
tgcatcgaactcgaaatcaacattaatgagttgtagatcgtacacccaactgatggcatgtaacaacctcaacacttcgcctacttccgtggagcagacc |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
28959343 |
tgcatcgaactcgaaatcaacgttaatgagttgtagatcgtacacccaactaatggcatgtaacaacctcaacacttcgcctacttccgtggagcatatc |
28959244 |
T |
|
| Q |
301 |
gacgtgg |
307 |
Q |
| |
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||||||| |
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| T |
28959243 |
gacgtgg |
28959237 |
T |
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